RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 IL13P35225 146 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 AVPR1AP37288 418 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 ANXA11P50995 505 aaKnown RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 UNC13DQ70J99 1090 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 THUMPD3Q9BV44 507 aaKnown RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 IARS2Q9NSE4 1012 aaKnown RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 ABHD10Q9NUJ1 306 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 NCF1BA6NI72 391 aaPredicted RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 NCF1CA8MVU1 366 aaPredicted RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 POTEIP0CG38 1075 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 CCDC130P13994 396 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 NCF1P14598 390 aaPredicted RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 ADD2P35612 726 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 CYLC2Q14093 348 aaPredicted RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 POTEGQ6S5H5 508 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 LXNQ9BS40 222 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 AVENQ9NQS1 362 aaPredicted RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 NMRK1Q9NWW6 199 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 ZNF189O75820 626 aaPredicted RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 RBBP4Q09028 425 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 HAUS6Q7Z4H7 955 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 PRUNE1Q86TP1 453 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 DENND6AQ8IWF6 608 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 FAM45AQ8TCE6 357 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 PHACTR1Q9C0D0 580 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 INTS2Q9H0H0 1204 aaKnown RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 TBC1D22BQ9NU19 505 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 ERN1O75460 977 aaKnown RBP11.87□□□□□ -0.51
PTPN4-201ENST00000263708 POU1F1P28069 291 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 GPSM2P81274 684 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 CLEC16AQ2KHT3 1053 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 ALKBH2Q6NS38 261 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 PODNQ7Z5L7 613 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 PRPF39Q86UA1 669 aaKnown RBP11.87□□□□□ -0.51
PTPN4-201ENST00000263708 CENPLQ8N0S6 344 aaPredicted RBP11.87□□□□□ -0.51
PTPN4-201ENST00000263708 RBBP8Q99708 897 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 AGRPO00253 132 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 GRAP2O75791 330 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 ZNF544Q6NX49 715 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 LRRC8DQ7L1W4 858 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 ADAM30Q9UKF2 790 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.87□□□□□ -0.51
PTPN4-201ENST00000263708 ESYT3A0FGR9 886 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 TNPO2O14787 897 aaKnown RBP11.87□□□□□ -0.51
PTPN4-201ENST00000263708 TALDO1P37837 337 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 TAF13Q15543 124 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 C10orf120Q5SQS8 335 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 LMBRD2Q68DH5 695 aaPredicted RBP11.87□□□□□ -0.51
PTPN4-201ENST00000263708 APOBEC3FQ8IUX4 373 aaKnown RBP11.87□□□□□ -0.51
PTPN4-201ENST00000263708 C10orf88Q9H8K7 445 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 CYP39A1Q9NYL5 469 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 NUDT14O95848 222 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 HOXA7P31268 230 aaPredicted RBP11.87□□□□□ -0.51
PTPN4-201ENST00000263708 STX3Q13277 289 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 TMEM132DQ14C87 1099 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 XPO6Q96QU8 1125 aaKnown RBP11.87□□□□□ -0.51
PTPN4-201ENST00000263708 MED15Q96RN5 788 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 CCDC134Q9H6E4 229 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 TTLL13PA6NNM8 815 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 PLEKHA8P1O95397 391 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 KRT76Q01546 638 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 TRIM16LQ309B1 348 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 DGKKQ5KSL6 1271 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 POTEAQ6S8J7 498 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 CRKP46108 304 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 KIF23Q02241 960 aaPredicted RBP11.87□□□□□ -0.51
PTPN4-201ENST00000263708 ZMYM1Q5SVZ6 1142 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 POTECB2RU33 542 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 STXBP3O00186 592 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 PSMD12O00232 456 aaPredicted RBP11.87□□□□□ -0.51
PTPN4-201ENST00000263708 ZBTB5O15062 677 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 KCNQ3O43525 872 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 GRK3P35626 688 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 RAD54LQ92698 747 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 CATSPERBQ9H7T0 1116 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 PIM2Q9P1W9 311 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 LIMA1Q9UHB6 759 aaKnown RBP11.87□□□□□ -0.51
PTPN4-201ENST00000263708 CBFBQ13951 182 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 ZNF618Q5T7W0 954 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 WLSQ5T9L3 541 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 TTC33Q6PID6 262 aaPredicted RBP11.87□□□□□ -0.51
PTPN4-201ENST00000263708 CYFIP2Q96F07 1278 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 RIC8BQ9NVN3 520 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 KLHL20Q9Y2M5 609 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 KIF24Q5T7B8 1368 aa11.87□□□□□ -0.51
PTPN4-201ENST00000263708 ITIH6Q6UXX5 1313 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 MYO3BQ8WXR4 1341 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 TRIM43BA6NCK2 446 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 USP17L15C9J2P7 530 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 USP17L13C9JLJ4 530 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 USP17L11C9JVI0 530 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 USP17L18D6R9N7 530 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 USP17L22D6RA61 530 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 USP17L17D6RBQ6 530 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 USP17L19D6RCP7 530 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 USP17L20D6RJB6 530 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 OR1G1P47890 313 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 USP17L24Q0WX57 530 aa11.86□□□□□ -0.51
PTPN4-201ENST00000263708 KNOP1Q1ED39 458 aaKnown RBP11.86□□□□□ -0.51
PTPN4-201ENST00000263708 TCEAL5Q5H9L2 206 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms