RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 SYCP2LQ5T4T6 812 aa11.27□□□□□ -0.6
CD44-201ENST00000263398 IER5Q5VY09 327 aa11.27□□□□□ -0.6
CD44-201ENST00000263398 ACTRT1Q8TDG2 376 aa11.27□□□□□ -0.6
CD44-201ENST00000263398 ZNF526Q8TF50 670 aaPredicted RBP11.27□□□□□ -0.6
CD44-201ENST00000263398 AFG1LQ8WV93 481 aa11.27□□□□□ -0.6
CD44-201ENST00000263398 RUSC1Q9BVN2 902 aa11.27□□□□□ -0.6
CD44-201ENST00000263398 TBX20Q9UMR3 447 aa11.27□□□□□ -0.6
CD44-201ENST00000263398 TRAF3IP3Q9Y228 551 aa11.27□□□□□ -0.6
CD44-201ENST00000263398 PXDNQ92626 1479 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 SPATA31A1Q5TZJ5 1347 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 RARGP13631 454 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 SULT1E1P49888 294 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 DDIASQ8IXT1 998 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 PPIL6Q8IXY8 311 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 CLMNQ96JQ2 1002 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 CEP19Q96LK0 163 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 KLF6Q99612 283 aaPredicted RBP11.27□□□□□ -0.61
CD44-201ENST00000263398 EGFL8Q99944 293 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 ASPSCR1Q9BZE9 553 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 PCMTD2Q9NV79 361 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 PRMT7Q9NVM4 692 aaPredicted RBP11.27□□□□□ -0.61
CD44-201ENST00000263398 GRID1Q9ULK0 1009 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 PIN4Q9Y237 131 aaKnown RBP11.27□□□□□ -0.61
CD44-201ENST00000263398 STIP1P31948 543 aaKnown RBP11.27□□□□□ -0.61
CD44-201ENST00000263398 BOLA3Q53S33 107 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 LRRC8EQ6NSJ5 796 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 APPL2Q8NEU8 664 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 MDM1Q8TC05 714 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 URGCPQ8TCY9 931 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 SLC4A7Q9Y6M7 1214 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 NEURL4Q96JN8 1562 aa11.27□□□□□ -0.61
CD44-201ENST00000263398 B2RBV5 119 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 RSPH10B2B2RC85 870 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 RSPH10BP0C881 870 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 RPS6P62753 249 aaKnown RBP11.26□□□□□ -0.61
CD44-201ENST00000263398 VPS72Q15906 364 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 PKN1Q16512 942 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 ATF7IP2Q5U623 682 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 RNF219Q5W0B1 726 aaPredicted RBP11.26□□□□□ -0.61
CD44-201ENST00000263398 PPHLN1Q8NEY8 458 aaKnown RBP11.26□□□□□ -0.61
CD44-201ENST00000263398 SLC40A1Q9NP59 571 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 CHORDC1Q9UHD1 332 aaPredicted RBP11.26□□□□□ -0.61
CD44-201ENST00000263398 DFFAO00273 331 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 GFAPP14136 432 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 SREBF1P36956 1147 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 SARSP49591 514 aaKnown RBP11.26□□□□□ -0.61
CD44-201ENST00000263398 ST3GAL1Q11201 340 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 PDK1Q15118 436 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 CNGA3Q16281 694 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 BTNL9Q6UXG8 535 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 EP400NLQ6ZTU2 488 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 CMTM5Q96DZ9 223 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 AGBL1Q96MI9 1066 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 TRIM54Q9BYV2 358 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 HACD3Q9P035 362 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 KCNA2P16389 499 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 KLRK1P26718 216 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 CASP4P49662 377 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 DNAJC3Q13217 504 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 GIT2Q14161 759 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 USP10Q14694 798 aaKnown RBP11.26□□□□□ -0.61
CD44-201ENST00000263398 KIF2BQ8N4N8 673 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 GPRASP2Q96D09 838 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 RMDN1Q96DB5 314 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 THTPAQ9BU02 230 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 AIPL1Q9NZN9 384 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 ZBTB12Q9Y330 459 aaPredicted RBP11.26□□□□□ -0.61
CD44-201ENST00000263398 A0A0A6YYK5 440 aaPredicted RBP11.26□□□□□ -0.61
CD44-201ENST00000263398 KIF1CO43896 1103 aaKnown RBP11.26□□□□□ -0.61
CD44-201ENST00000263398 GPD1P21695 349 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 ACADSBP45954 432 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 NT5DC1Q5TFE4 455 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 GRAMD4Q6IC98 578 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 POTEAQ6S8J7 498 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 LRRC34Q8IZ02 419 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 E2F7Q96AV8 911 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 CCDC90BQ9GZT6 254 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 MANSC1Q9H8J5 431 aa11.26□□□□□ -0.61
CD44-201ENST00000263398 STX18Q9P2W9 335 aaKnown RBP11.26□□□□□ -0.61
CD44-201ENST00000263398 GTPBP10A4D1E9 387 aaKnown RBP11.25□□□□□ -0.61
CD44-201ENST00000263398 PSTPIP1O43586 416 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 GRAP2O75791 330 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 TMCC1O94876 653 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 CD4P01730 458 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 POLBP06746 335 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 ERFP50548 548 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 GEMIN4P57678 1058 aaKnown RBP11.25□□□□□ -0.61
CD44-201ENST00000263398 ABCE1P61221 599 aaKnown RBP11.25□□□□□ -0.61
CD44-201ENST00000263398 CUL2Q13617 745 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 TBCCQ15814 346 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 MICALL2Q8IY33 904 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 FBXO25Q8TCJ0 367 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 SCFD1Q8WVM8 642 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 PBXIP1Q96AQ6 731 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 ASIC4Q96FT7 647 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 PACSIN1Q9BY11 444 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 VPS33BQ9H267 617 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 UNC45AQ9H3U1 944 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 CNOT7Q9UIV1 285 aaKnown RBP11.25□□□□□ -0.61
CD44-201ENST00000263398 FAM205AQ6ZU69 1335 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms