RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PSMC5P62195 406 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 MAPK6Q16659 721 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 SGSM1Q2NKQ1 1148 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 RFWD3Q6PCD5 774 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 ZBTB33Q86T24 672 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 C4orf19Q8IY42 314 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 CNKSR1Q969H4 720 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 POLR3FQ9H1D9 316 aaPredicted RBP11.33□□□□□ -0.6
USP28-201ENST00000003302 KCND2Q9NZV8 630 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 SLC17A7Q9P2U7 560 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 MTUS1Q9ULD2 1270 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 TRIP11Q15643 1979 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 ENTPD5O75356 428 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 GLRA2P23416 452 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 ZACNQ401N2 412 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 TTC7BQ86TV6 843 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 JOSD2Q8TAC2 188 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 PPP1R13LQ8WUF5 828 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 PPP1R16BQ96T49 567 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 TMEM109Q9BVC6 243 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 KIAA1683Q9H0B3 1180 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 SLC24A3Q9HC58 644 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 PDLIM7Q9NR12 457 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 DIS3Q9Y2L1 958 aaKnown RBP11.33□□□□□ -0.6
USP28-201ENST00000003302 CCDC172P0C7W6 258 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 MAGEA4P43358 317 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 CDH8P55286 799 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 CXCL9Q07325 125 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 CETN1Q12798 172 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 GPS1Q13098 491 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 TCEAL1Q15170 157 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 GSTA5Q7RTV2 222 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 SPNS2Q8IVW8 549 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 ZBED8Q8IZ13 594 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 YY1AP1Q9H869 796 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 DCTN4Q9UJW0 460 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 ARID2Q68CP9 1835 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 PROSCO94903 275 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 KCNA3P22001 575 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 ADRA1DP25100 572 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 STX2P32856 288 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 ARSEP51690 589 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 CENPCQ03188 943 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 TFDP1Q14186 410 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 SLMAPQ14BN4 828 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 ARHGEF16Q5VV41 709 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 RFX8Q6ZV50 586 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 STXBP4Q6ZWJ1 553 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 FBXO27Q8NI29 283 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 ASCC2Q9H1I8 757 aaPredicted RBP11.32□□□□□ -0.6
USP28-201ENST00000003302 CXCL16Q9H2A7 254 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 ETNK1Q9HBU6 452 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 WHRNQ9P202 907 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 UVRAGQ9P2Y5 699 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 ASMTLO95671 621 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 NR3C2P08235 984 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 EPHB2P29323 1055 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 GNA15P30679 374 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 GTF2H1P32780 548 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 ZNF268Q14587 947 aaPredicted RBP11.32□□□□□ -0.6
USP28-201ENST00000003302 MTMR12Q9C0I1 747 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 A1CFQ9NQ94 594 aaKnown RBP11.32□□□□□ -0.6
USP28-201ENST00000003302 FEM1BQ9UK73 627 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 PCDHB4Q9Y5E5 795 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 GSTTP1A0A1W2PQM5 241 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 E5RJQ4 531 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 NPM3O75607 178 aaKnown RBP11.32□□□□□ -0.6
USP28-201ENST00000003302 NSFP46459 744 aaKnown RBP11.32□□□□□ -0.6
USP28-201ENST00000003302 COPS2P61201 443 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 ITIH4Q14624 930 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 ZNF276Q8N554 614 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 RFWD2Q8NHY2 731 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 SLC7A6OSQ96CW6 309 aaPredicted RBP11.32□□□□□ -0.6
USP28-201ENST00000003302 TMX4Q9H1E5 349 aaPredicted RBP11.32□□□□□ -0.6
USP28-201ENST00000003302 FBXO6Q9NRD1 293 aaPredicted RBP11.32□□□□□ -0.6
USP28-201ENST00000003302 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.32□□□□□ -0.6
USP28-201ENST00000003302 LRRIQ4A6NIV6 560 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 TMEM63AO94886 807 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 GHRP10912 638 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 PIK3CAP42336 1068 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 NPNTQ6UXI9 565 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 GPD1LQ8N335 351 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 ZNF606Q8WXB4 792 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 CNKSR2Q8WXI2 1034 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 MIPEPQ99797 713 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 LCTP09848 1927 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 RLFQ13129 1914 aa11.32□□□□□ -0.6
USP28-201ENST00000003302 MMRN1Q13201 1228 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 TRABD2AQ86V40 505 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 ANKS4BQ8N8V4 417 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 RBBP8NLQ8NC74 664 aaPredicted RBP11.31□□□□□ -0.6
USP28-201ENST00000003302 DENND1AQ8TEH3 1009 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 TRAPPC12Q8WVT3 735 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 ARHGEF3Q9NR81 526 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 ARHGAP28Q9P2N2 729 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 SUFUQ9UMX1 484 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 ZNF148Q9UQR1 794 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 EVPLQ92817 2033 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 WDR64B1ANS9 1081 aa11.31□□□□□ -0.6
USP28-201ENST00000003302 VWA5AO00534 786 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms