RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 EEF2KO00418 725 aaKnown RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 CDH6P55285 790 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 HNRNPH2P55795 449 aaKnown RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 SGSM1Q2NKQ1 1148 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 FNDC3BQ53EP0 1204 aaKnown RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 IZUMO3Q5VZ72 239 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 PIP4K2CQ8TBX8 421 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 TFB1MQ8WVM0 346 aaKnown RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 EIF2AK1Q9BQI3 630 aaKnown RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 MED4Q9NPJ6 270 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 TLR8Q9NR97 1041 aaKnown RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 GID8Q9NWU2 228 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 ARHGEF38Q9NXL2 777 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 WDR35Q9P2L0 1181 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 PRG3Q9Y2Y8 225 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 DYRK1BQ9Y463 629 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 M0R3G1 203 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 TIPRLO75663 272 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 PTPN3P26045 913 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 WEE1P30291 646 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 PLTPP55058 493 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 EIF3BP55884 814 aaKnown RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 PTH1RQ03431 593 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 C6orf118Q5T5N4 469 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 ATF7IP2Q5U623 682 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 CCNYL1Q8N7R7 359 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 FBXO41Q8TF61 875 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 PTPRN2Q92932 1015 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 ZBTB9Q96C00 473 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 ZNF668Q96K58 619 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 ATP6V1HQ9UI12 483 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 PRR23D1E9PI22 279 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 MAPK13O15264 365 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 PJA2O43164 708 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 ARHGEF9O43307 516 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 EIF2S1P05198 315 aaKnown RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 PRR23D2P0DMB1 279 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 FGFR2P21802 821 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 PTK6Q13882 451 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 DEFB115Q30KQ5 88 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 SLFNL1Q499Z3 407 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 ZNF280DQ6N043 979 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 PID1Q7Z2X4 250 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 LINC00523Q86TU6 105 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 KSR1Q8IVT5 923 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 SSH3Q8TE77 659 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 C18orf8Q96DM3 657 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 PUS3Q9BZE2 481 aaKnown RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 ANLNQ9NQW6 1124 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 ZNF70Q9UC06 446 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 BAIAP2L1Q9UHR4 511 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 PPIEQ9UNP9 301 aaKnown RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 MEFVO15553 781 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 PDGFRBP09619 1106 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 NCAM1P13591 858 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 ADCY2Q08462 1091 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 SF3A3Q12874 501 aaKnown RBP eCLIP6.42□□□□□ -1.382e-17■■■■■ 37.8
SCN1A-217ENST00000637988 CCDC149Q6ZUS6 474 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 UNC13DQ70J99 1090 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 MTSS1LQ765P7 747 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 HOMEZQ8IX15 550 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 ADI1Q9BV57 179 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 ATP8A1Q9Y2Q0 1164 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 IQSEC2Q5JU85 1478 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 ERVK-7P63135 1459 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 ANGPT2O15123 496 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 SLC26A4O43511 780 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 TRPA1O75762 1119 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 DPEP1P16444 411 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 DNAJB2P25686 324 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 SLC8A1P32418 973 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 NUP62P37198 522 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 TAF6P49848 677 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 CTXN3Q4LDR2 81 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 CCDC184Q52MB2 194 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 EFHC1Q5JVL4 640 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 CHAMP1Q96JM3 812 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 GOLPH3LQ9H4A5 285 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 SPATS2LQ9NUQ6 558 aaKnown RBP6.42□□□□□ -1.38
SCN1A-217ENST00000637988 UVRAGQ9P2Y5 699 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 SAMD9LQ8IVG5 1584 aa6.42□□□□□ -1.38
SCN1A-217ENST00000637988 TBKBP1A7MCY6 615 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 MIF4GDA9UHW6 222 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 SH2B2O14492 632 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ACSL4O60488 711 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 CHI3L1P36222 383 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 SLC15A2Q16348 729 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 TIGD7Q6NT04 549 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 FOXR1Q6PIV2 292 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 KDELC2Q7Z4H8 507 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 KRT77Q7Z794 578 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 RNF168Q8IYW5 571 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 KCNS3Q9BQ31 491 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 KCND2Q9NZV8 630 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 RWDD3Q9Y3V2 267 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 CHUKO15111 745 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ENTPD3O75355 529 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 B3GAT3O94766 335 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 NPTXRO95502 500 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 GUCY2CP25092 1073 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms