RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 CALUO43852 315 aaPredicted RBP9.53□□□□□ -0.88
SMAD4-217ENST00000611848 TADA2AO75478 443 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 DNAJB1P25685 340 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 RPL9P32969 192 aaKnown RBP9.53□□□□□ -0.88
SMAD4-217ENST00000611848 ZBTB6Q15916 424 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 DCLRE1AQ6PJP8 1040 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 FOXR2Q6PJQ5 311 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 SYT10Q6XYQ8 523 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 TOGARAM2Q6ZUX3 1019 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 TMC7Q7Z402 723 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 TMEM173Q86WV6 379 aaPredicted RBP9.53□□□□□ -0.88
SMAD4-217ENST00000611848 SLC9A9Q8IVB4 645 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 BRSK2Q8IWQ3 736 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 XXYLT1Q8NBI6 393 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 MICAL1Q8TDZ2 1067 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 FBXL18Q96ME1 805 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 FAM213AQ9BRX8 229 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 VPS16Q9H269 839 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 KCTD10Q9H3F6 313 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 NSUN3Q9H649 340 aaKnown RBP9.53□□□□□ -0.88
SMAD4-217ENST00000611848 MARCH5Q9NX47 278 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 ADAM28Q9UKQ2 775 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 DERAQ9Y315 318 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 C2CD2Q9Y426 696 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 GOLGA8IPA6NC78 632 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 GOLGA8JA6NMD2 632 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 SOD2P04179 222 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 LRPAP1P30533 357 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 CASP14P31944 242 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 ERVFC1P60507 584 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 SOX4Q06945 474 aaPredicted RBP9.53□□□□□ -0.88
SMAD4-217ENST00000611848 MYBPC2Q14324 1141 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 TMEM132DQ14C87 1099 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 SURF1Q15526 300 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 UPP1Q16831 310 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 VPS52Q8N1B4 723 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 BEST2Q8NFU1 509 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 MAFAQ8NHW3 353 aaPredicted RBP9.53□□□□□ -0.88
SMAD4-217ENST00000611848 BCL7CQ8WUZ0 217 aaPredicted RBP9.53□□□□□ -0.88
SMAD4-217ENST00000611848 TCF25Q9BQ70 676 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 SRRTQ9BXP5 876 aaKnown RBP9.53□□□□□ -0.88
SMAD4-217ENST00000611848 ZBP1Q9H171 429 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 ENTPD7Q9NQZ7 604 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 RBAKQ9NYW8 714 aaPredicted RBP9.53□□□□□ -0.88
SMAD4-217ENST00000611848 TRAF3IP3Q9Y228 551 aa9.53□□□□□ -0.88
SMAD4-217ENST00000611848 SF3B1O75533 1304 aaKnown RBP eCLIP9.52□□□□□ -0.897e-6■■■■■ 33.4
SMAD4-217ENST00000611848 PODXLO00592 558 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 TRAPPC3O43617 180 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 NCK2O43639 380 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 EXOC3O60645 756 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 B3GAT3O94766 335 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 EFEMP2O95967 443 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 TPM1P09493 284 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 CTSAP10619 480 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 IRS1P35568 1242 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 CYP2J2P51589 502 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 CLCNKBP51801 687 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 UBXN1Q04323 297 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 ELAVL2Q12926 359 aaKnown RBP9.52□□□□□ -0.89
SMAD4-217ENST00000611848 SMC1AQ14683 1233 aaKnown RBP9.52□□□□□ -0.89
SMAD4-217ENST00000611848 NFIL3Q16649 462 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 ANKRD40Q6AI12 368 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 JADE1Q6IE81 842 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 CENPPQ6IPU0 288 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 FUT10Q6P4F1 479 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 GPR65Q8IYL9 337 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 RNF168Q8IYW5 571 aaPredicted RBP9.52□□□□□ -0.89
SMAD4-217ENST00000611848 MICALL1Q8N3F8 863 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 CSGALNACT2Q8N6G5 542 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 ZSWIM2Q8NEG5 633 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 C18orf25Q96B23 403 aaPredicted RBP9.52□□□□□ -0.89
SMAD4-217ENST00000611848 PAAF1Q9BRP4 392 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 HERC2P3Q9BVR0 1158 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 GOLGA2P5Q9HBQ8 144 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 DMAC2Q9NW81 257 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 MAGEC2Q9UBF1 373 aaPredicted RBP9.52□□□□□ -0.89
SMAD4-217ENST00000611848 SSX2IPQ9Y2D8 614 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 IRAK3Q9Y616 596 aa9.52□□□□□ -0.89
SMAD4-217ENST00000611848 SCN1AP35498 2009 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 SOWAHDA6NJG2 315 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 KIF4AO95239 1232 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 SLU7O95391 586 aaKnown RBP9.51□□□□□ -0.89
SMAD4-217ENST00000611848 NR3C1P04150 777 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 NFICP08651 508 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 CCDC175P0C221 793 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 PAX3P23760 479 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 RPL13P26373 211 aaKnown RBP9.51□□□□□ -0.89
SMAD4-217ENST00000611848 SNRNP35Q16560 246 aaKnown RBP9.51□□□□□ -0.89
SMAD4-217ENST00000611848 USP41Q3LFD5 358 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 TCEAL5Q5H9L2 206 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 PLPP4Q5VZY2 271 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 RAD9BQ6WBX8 426 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 CBWD2Q8IUF1 395 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 TMTC1Q8IUR5 882 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 FAM114A1Q8IWE2 563 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 MRPL43Q8N983 215 aaKnown RBP9.51□□□□□ -0.89
SMAD4-217ENST00000611848 CPLX3Q8WVH0 158 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 RABGGTAQ92696 567 aa9.51□□□□□ -0.89
SMAD4-217ENST00000611848 CDCA3Q99618 268 aaPredicted RBP9.51□□□□□ -0.89
SMAD4-217ENST00000611848 VN1R3Q9BXE9 311 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms