RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PALB2Q86YC2 1186 aa17.46■□□□□ 0.39
TRIM28-213ENST00000598355 SLC9A9Q8IVB4 645 aa17.46■□□□□ 0.39
TRIM28-213ENST00000598355 C1orf127Q8N9H9 656 aa17.46■□□□□ 0.39
TRIM28-213ENST00000598355 APPL2Q8NEU8 664 aa17.46■□□□□ 0.39
TRIM28-213ENST00000598355 SPATA20Q8TB22 786 aa17.46■□□□□ 0.39
TRIM28-213ENST00000598355 KHSRPQ92945 711 aaKnown RBP eCLIP17.46■□□□□ 0.39
TRIM28-213ENST00000598355 PDE11AQ9HCR9 933 aa17.46■□□□□ 0.39
TRIM28-213ENST00000598355 DPP3Q9NY33 737 aa17.46■□□□□ 0.39
TRIM28-213ENST00000598355 PTPRJQ12913 1337 aa17.46■□□□□ 0.38
TRIM28-213ENST00000598355 WDR27A2RRH5 827 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 ZNF233A6NK53 670 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 H7C4K7 107 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 RFPL2O75678 378 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 ZMYND10O75800 440 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 ABLIM3O94929 683 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 CYP11A1P05108 521 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 ANP32AP39687 249 aaKnown RBP17.45■□□□□ 0.38
TRIM28-213ENST00000598355 SNRNP35Q16560 246 aaKnown RBP17.45■□□□□ 0.38
TRIM28-213ENST00000598355 ZNF280DQ6N043 979 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 RTL10Q7L3V2 364 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 GOLGA5Q8TBA6 731 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 BORCS6Q96GS4 357 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 TIGD1Q96MW7 591 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 GZF1Q9H116 711 aaPredicted RBP17.45■□□□□ 0.38
TRIM28-213ENST00000598355 DMAC2Q9NW81 257 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 CHMP5Q9NZZ3 219 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 FBXL5Q9UKA1 691 aa17.45■□□□□ 0.38
TRIM28-213ENST00000598355 PDXKO00764 312 aa17.44■□□□□ 0.38
TRIM28-213ENST00000598355 SURF1Q15526 300 aa17.44■□□□□ 0.38
TRIM28-213ENST00000598355 ATAT1Q5SQI0 421 aa17.44■□□□□ 0.38
TRIM28-213ENST00000598355 ELOA2Q8IYF1 753 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-213ENST00000598355 LRRC52Q8N7C0 313 aa17.44■□□□□ 0.38
TRIM28-213ENST00000598355 XXYLT1Q8NBI6 393 aa17.44■□□□□ 0.38
TRIM28-213ENST00000598355 ZNF461Q8TAF7 563 aa17.44■□□□□ 0.38
TRIM28-213ENST00000598355 CCDC34Q96HJ3 373 aa17.44■□□□□ 0.38
TRIM28-213ENST00000598355 SENP8Q96LD8 212 aa17.44■□□□□ 0.38
TRIM28-213ENST00000598355 OXCT2Q9BYC2 517 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-213ENST00000598355 INTS13Q9NVM9 706 aa17.44■□□□□ 0.38
TRIM28-213ENST00000598355 SIX4Q9UIU6 781 aa17.44■□□□□ 0.38
TRIM28-213ENST00000598355 ITGA11Q9UKX5 1188 aa17.44■□□□□ 0.38
TRIM28-213ENST00000598355 USTQ9Y2C2 406 aa17.44■□□□□ 0.38
TRIM28-213ENST00000598355 TECTAO75443 2155 aa17.44■□□□□ 0.38
TRIM28-213ENST00000598355 PTPRDP23468 1912 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 CCDC195A0A1B0GUA6 201 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 GOLGA6L4A6NEF3 574 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 CLIC2O15247 247 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 C8AP07357 584 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 HNRNPA1P09651 372 aaKnown RBP eCLIP17.43■□□□□ 0.38
TRIM28-213ENST00000598355 WEE2P0C1S8 567 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 SPATA31D3P0C874 917 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 ODC1P11926 461 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 TAF6P49848 677 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 YWHAHQ04917 246 aaPredicted RBP17.43■□□□□ 0.38
TRIM28-213ENST00000598355 CYP24A1Q07973 514 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 PSMD6Q15008 389 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 NFIL3Q16649 462 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 UVSSAQ2YD98 709 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 CTXN3Q4LDR2 81 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 SPATA31D4Q6ZUB0 917 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 WDR49Q8IV35 697 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 GUF1Q8N442 669 aaKnown RBP17.43■□□□□ 0.38
TRIM28-213ENST00000598355 ZNF560Q96MR9 790 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 PRKD2Q9BZL6 878 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 MTMR12Q9C0I1 747 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 TRAF3IP3Q9Y228 551 aa17.43■□□□□ 0.38
TRIM28-213ENST00000598355 ARHGEF37A1IGU5 675 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 ITGB3P05106 788 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 ATF2P15336 505 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 POLR2BP30876 1174 aaKnown RBP17.42■□□□□ 0.38
TRIM28-213ENST00000598355 SSTR3P32745 418 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-213ENST00000598355 PNPLA4P41247 253 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 CYP2J2P51589 502 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 TFAMQ00059 246 aaKnown RBP17.42■□□□□ 0.38
TRIM28-213ENST00000598355 MYBPC2Q14324 1141 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 SV2CQ496J9 727 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 ZCWPW2Q504Y3 356 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 COBLL1Q53SF7 1204 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 LIN9Q5TKA1 542 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 TPGS2Q68CL5 300 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 OR5B17Q8NGF7 314 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 CACTINQ8WUQ7 758 aaKnown RBP17.42■□□□□ 0.38
TRIM28-213ENST00000598355 CCDC47Q96A33 483 aaKnown RBP17.42■□□□□ 0.38
TRIM28-213ENST00000598355 FAM84AQ96KN4 292 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 MFSD14AQ96MC6 490 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 CGRRF1Q99675 332 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 WDR6Q9NNW5 1121 aaKnown RBP17.42■□□□□ 0.38
TRIM28-213ENST00000598355 CLUHO75153 1309 aa17.42■□□□□ 0.38
TRIM28-213ENST00000598355 OR6C75A6NL08 312 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 PI4K2BG5E9Z4 385 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 CLDN10P78369 228 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 PNOCQ13519 176 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 SCARA3Q6AZY7 606 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 OVOS1Q6IE37 1185 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 DSTYKQ6XUX3 929 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 CCDC149Q6ZUS6 474 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 RNF135Q8IUD6 432 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 TCEAL8Q8IYN2 117 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 SLC7A14Q8TBB6 771 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 SMG7Q92540 1137 aaKnown RBP17.41■□□□□ 0.38
TRIM28-213ENST00000598355 GSDMAQ96QA5 445 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms