RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 RESP18Q5W5W9 173 aa13.4□□□□□ -0.26
SS18-225ENST00000585121 ARMCX5Q6P1M9 558 aa13.4□□□□□ -0.26
SS18-225ENST00000585121 TCEAL8Q8IYN2 117 aa13.4□□□□□ -0.26
SS18-225ENST00000585121 CACTINQ8WUQ7 758 aaKnown RBP13.4□□□□□ -0.26
SS18-225ENST00000585121 SENP8Q96LD8 212 aa13.4□□□□□ -0.26
SS18-225ENST00000585121 PRRX2Q99811 253 aa13.4□□□□□ -0.26
SS18-225ENST00000585121 C7orf25Q9BPX7 421 aa13.4□□□□□ -0.26
SS18-225ENST00000585121 MFSD1Q9H3U5 465 aa13.4□□□□□ -0.26
SS18-225ENST00000585121 AFF4Q9UHB7 1163 aaKnown RBP13.4□□□□□ -0.26
SS18-225ENST00000585121 RCOR1Q9UKL0 485 aa13.4□□□□□ -0.26
SS18-225ENST00000585121 FBXL21Q9UKT6 434 aa13.4□□□□□ -0.26
SS18-225ENST00000585121 CDH7Q9ULB5 785 aa13.4□□□□□ -0.26
SS18-225ENST00000585121 TIMM13Q9Y5L4 95 aaPredicted RBP13.4□□□□□ -0.26
SS18-225ENST00000585121 EXTL3O43909 919 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 PTPN2P17706 415 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 TAF6P49848 677 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 CASP5P51878 434 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 KRT85P78386 507 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 ADCY1Q08828 1119 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 BECN1Q14457 450 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 OVOS1Q6IE37 1185 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 IQCEQ6IPM2 695 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 CNNM4Q6P4Q7 775 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 CRELD2Q6UXH1 353 aaPredicted RBP13.39□□□□□ -0.27
SS18-225ENST00000585121 METTL23Q86XA0 190 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 SAAL1Q96ER3 474 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 IKZF4Q9H2S9 585 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 RBAKQ9NYW8 714 aaPredicted RBP13.39□□□□□ -0.27
SS18-225ENST00000585121 DSEQ9UL01 958 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 KCNH3Q9ULD8 1083 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 DUSP12Q9UNI6 340 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 MRPS23Q9Y3D9 190 aaKnown RBP13.39□□□□□ -0.27
SS18-225ENST00000585121 R3HCC1Q9Y3T6 440 aaKnown RBP13.39□□□□□ -0.27
SS18-225ENST00000585121 MTCL1Q9Y4B5 1905 aaKnown RBP13.39□□□□□ -0.27
SS18-225ENST00000585121 ANO9A1A5B4 782 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 PIRO00625 290 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 EIF3DO15371 548 aaKnown RBP eCLIP13.39□□□□□ -0.27
SS18-225ENST00000585121 PLA2G5P39877 138 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 NTHL1P78549 312 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 TFAMQ00059 246 aaKnown RBP13.39□□□□□ -0.27
SS18-225ENST00000585121 FAM26FQ5R3K3 315 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 UNC13DQ70J99 1090 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 MTSS1LQ765P7 747 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 BRSK2Q8IWQ3 736 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 TMEM130Q8N3G9 435 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 SPATA32Q96LK8 384 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 ZNF512Q96ME7 567 aaPredicted RBP13.39□□□□□ -0.27
SS18-225ENST00000585121 ZNF560Q96MR9 790 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 PCIF1Q9H4Z3 704 aa13.39□□□□□ -0.27
SS18-225ENST00000585121 DNMT3BQ9UBC3 853 aaKnown RBP13.39□□□□□ -0.27
SS18-225ENST00000585121 VWA8A3KMH1 1905 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 ZDBF2Q9HCK1 2354 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 MYO10Q9HD67 2058 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 GOLGA8IPA6NC78 632 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 GOLGA8JA6NMD2 632 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 CYB561D2O14569 222 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 ZNF197O14709 1029 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 PPEF2O14830 753 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 RHOP08100 348 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 ANP32AP39687 249 aaKnown RBP13.38□□□□□ -0.27
SS18-225ENST00000585121 PNPLA4P41247 253 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 PLD1Q13393 1074 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 MYBPC2Q14324 1141 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 SURF1Q15526 300 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 SV2CQ496J9 727 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 CYP4A22Q5TCH4 519 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 THEM5Q8N1Q8 247 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 GPD1LQ8N335 351 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 SLC44A3Q8N4M1 653 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 RSAD2Q8WXG1 361 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 FGF13Q92913 245 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 CORO1BQ9BR76 489 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 CBWD1Q9BRT8 395 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 FGFBP2Q9BYJ0 223 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 SMOC2Q9H3U7 446 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 KIAA1586Q9HCI6 787 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 AVENQ9NQS1 362 aaPredicted RBP13.38□□□□□ -0.27
SS18-225ENST00000585121 HCFC1R1Q9NWW0 138 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 INSL5Q9Y5Q6 135 aa13.38□□□□□ -0.27
SS18-225ENST00000585121 C2orf16Q68DN1 1984 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.37□□□□□ -0.27
SS18-225ENST00000585121 PVALEFA0A1B0GWK0 134 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 ZNF233A6NK53 670 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 SEC24AO95486 1093 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 RFX1P22670 979 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 AVPR2P30518 371 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 AFMP43652 599 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 SNRPFP62306 86 aaKnown RBP13.37□□□□□ -0.27
SS18-225ENST00000585121 GPR17Q13304 367 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 RNF19BQ6ZMZ0 732 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 PDZD4Q76G19 769 aaPredicted RBP13.37□□□□□ -0.27
SS18-225ENST00000585121 HS2ST1Q7LGA3 356 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 EFCAB13Q8IY85 973 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 ITFG1Q8TB96 612 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 ZNF507Q8TCN5 953 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 LEO1Q8WVC0 666 aaPredicted RBP13.37□□□□□ -0.27
SS18-225ENST00000585121 HPS3Q969F9 1004 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 BLZF1Q9H2G9 400 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 USP25Q9UHP3 1055 aa13.37□□□□□ -0.27
SS18-225ENST00000585121 UBE4BO95155 1302 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms