RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 PNPOQ9NVS9 261 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 GABBR1Q9UBS5 961 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 TCEAL9Q9UHQ7 104 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 KCNE5Q9UJ90 142 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 H3BML4 177 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 CYR61O00622 381 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 UBXN7O94888 489 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 MATN4O95460 622 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 SLPIP03973 132 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 HLA-DOAP06340 250 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 GJB1P08034 283 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 KRT4P19013 534 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 CYP2A13Q16696 494 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 PDSS2Q86YH6 399 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 DENND1CQ8IV53 801 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 ULK2Q8IYT8 1036 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 CAMKK1Q8N5S9 505 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 ZBTB34Q8NCN2 500 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 SLC17A8Q8NDX2 589 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 KLHDC4Q8TBB5 520 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 SLC35A4Q96G79 324 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 LRIG1Q96JA1 1093 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 CDK5RAP3Q96JB5 506 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 PUS7Q96PZ0 661 aaKnown RBP6.77□□□□□ -1.33
NUP88-213ENST00000576862 ALOXE3Q9BYJ1 711 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 IMPG2Q9BZV3 1241 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 PCED1AQ9H1Q7 454 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 BRD9Q9H8M2 597 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 TMEM74BQ9NUR3 256 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 GNL3LQ9NVN8 582 aaKnown RBP6.77□□□□□ -1.33
NUP88-213ENST00000576862 RLIMQ9NVW2 624 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 FEZ2Q9UHY8 353 aaPredicted RBP6.77□□□□□ -1.33
NUP88-213ENST00000576862 CDYLQ9Y232 598 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 PCDHA1Q9Y5I3 950 aa6.77□□□□□ -1.33
NUP88-213ENST00000576862 H3BUI4 141 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 CDKL5O76039 1030 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 AHSGP02765 367 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 ANXA1P04083 346 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 GNAI3P08754 354 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 MYBP10242 640 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 IL12RB1P42701 662 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 PHKA1P46020 1223 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 PSMC1P62191 440 aaKnown RBP6.76□□□□□ -1.33
NUP88-213ENST00000576862 GNAI1P63096 354 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 GUCY1B3Q02153 619 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 KIF22Q14807 665 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 MLC1Q15049 377 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 USP51Q70EK9 711 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 OVCH2Q7RTZ1 564 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 VRK3Q8IV63 474 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 FAM43AQ8N2R8 423 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 AMER2Q8N7J2 671 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 PDPRQ8NCN5 879 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 ASB10Q8WXI3 467 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 FUBP1Q96AE4 644 aaKnown RBP6.76□□□□□ -1.33
NUP88-213ENST00000576862 RNF31Q96EP0 1072 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 BOD1Q96IK1 185 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 MED15Q96RN5 788 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 KRTAP4-2Q9BYR5 136 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 WDR11Q9BZH6 1224 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 SERHL2Q9H4I8 314 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 GPR35Q9HC97 309 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 SLAMF7Q9NQ25 335 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 CTTNBP2NLQ9P2B4 639 aa6.76□□□□□ -1.33
NUP88-213ENST00000576862 B3GALT2O43825 422 aa6.75□□□□□ -1.33
NUP88-213ENST00000576862 U2AF1L5P0DN76 240 aaPredicted RBP6.75□□□□□ -1.33
NUP88-213ENST00000576862 HTR1BP28222 390 aa6.75□□□□□ -1.33
NUP88-213ENST00000576862 ZEB1P37275 1124 aaPredicted RBP6.75□□□□□ -1.33
NUP88-213ENST00000576862 U2AF1Q01081 240 aaKnown RBP eCLIP6.75□□□□□ -1.33
NUP88-213ENST00000576862 CCDC157Q569K6 752 aa6.75□□□□□ -1.33
NUP88-213ENST00000576862 ARMC6Q6NXE6 501 aa6.75□□□□□ -1.33
NUP88-213ENST00000576862 FOXR2Q6PJQ5 311 aa6.75□□□□□ -1.33
NUP88-213ENST00000576862 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.75□□□□□ -1.33
NUP88-213ENST00000576862 MYO1HQ8N1T3 1032 aa6.75□□□□□ -1.33
NUP88-213ENST00000576862 CFAP52Q8N1V2 620 aa6.75□□□□□ -1.33
NUP88-213ENST00000576862 CELF5Q8N6W0 485 aaKnown RBP6.75□□□□□ -1.33
NUP88-213ENST00000576862 NSUN7Q8NE18 718 aaKnown RBP6.75□□□□□ -1.33
NUP88-213ENST00000576862 TNPO1Q92973 898 aaKnown RBP6.75□□□□□ -1.33
NUP88-213ENST00000576862 SCAMP4Q969E2 229 aa6.75□□□□□ -1.33
NUP88-213ENST00000576862 ARMT1Q9H993 441 aa6.75□□□□□ -1.33
NUP88-213ENST00000576862 METTL14Q9HCE5 456 aaKnown RBP6.75□□□□□ -1.33
NUP88-213ENST00000576862 MRPS18AQ9NVS2 196 aaKnown RBP6.75□□□□□ -1.33
NUP88-213ENST00000576862 RNF181Q9P0P0 153 aa6.75□□□□□ -1.33
NUP88-213ENST00000576862 CFAP97Q9P2B7 532 aa6.75□□□□□ -1.33
NUP88-213ENST00000576862 ZDHHC8Q9ULC8 765 aa6.75□□□□□ -1.33
NUP88-213ENST00000576862 AGAP1Q9UPQ3 857 aa6.75□□□□□ -1.33
NUP88-213ENST00000576862 NOX1Q9Y5S8 564 aa6.75□□□□□ -1.33
NUP88-213ENST00000576862 COL4A3Q01955 1670 aa6.74□□□□□ -1.33
NUP88-213ENST00000576862 A0A088AWK7 358 aa6.74□□□□□ -1.33
NUP88-213ENST00000576862 ZNF785A8K8V0 405 aa6.74□□□□□ -1.33
NUP88-213ENST00000576862 CTNND1O60716 968 aaKnown RBP6.74□□□□□ -1.33
NUP88-213ENST00000576862 TUSC2O75896 110 aa6.74□□□□□ -1.33
NUP88-213ENST00000576862 EGR2P11161 476 aaPredicted RBP6.74□□□□□ -1.33
NUP88-213ENST00000576862 RAB1AP62820 205 aa6.74□□□□□ -1.33
NUP88-213ENST00000576862 FHL2Q14192 279 aa6.74□□□□□ -1.33
NUP88-213ENST00000576862 PTPAQ15257 358 aa6.74□□□□□ -1.33
NUP88-213ENST00000576862 SPDYE7PQ495Y7 208 aa6.74□□□□□ -1.33
NUP88-213ENST00000576862 MINDY4Q4G0A6 757 aa6.74□□□□□ -1.33
NUP88-213ENST00000576862 CRB2Q5IJ48 1285 aa6.74□□□□□ -1.33
NUP88-213ENST00000576862 GPR149Q86SP6 731 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms