RNA–Protein interactions for RNA: ENST00000576708.5

NUP88-212, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-212ENST00000576708 TWF2Q6IBS0 349 aaKnown RBP6.95□□□□□ -1.3
NUP88-212ENST00000576708 NCAPH2Q6IBW4 605 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 ANKRD54Q6NXT1 300 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 CPLX2Q6PUV4 134 aaKnown RBP6.95□□□□□ -1.3
NUP88-212ENST00000576708 MOXD1Q6UVY6 613 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 PIK3AP1Q6ZUJ8 805 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 CATSPER4Q7RTX7 472 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 NEK8Q86SG6 692 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 ZNF280BQ86YH2 543 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 AGGF1Q8N302 714 aaeCLIP6.95□□□□□ -1.3
NUP88-212ENST00000576708 TMEM151AQ8N4L1 468 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 PRPF31Q8WWY3 499 aaKnown RBP6.95□□□□□ -1.3
NUP88-212ENST00000576708 SUSD6Q92537 303 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 HAS1Q92839 578 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 MRRFQ96E11 262 aaKnown RBP6.95□□□□□ -1.3
NUP88-212ENST00000576708 CRELD1Q96HD1 420 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 DYDC2Q96IM9 177 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 CEP170P1Q96L14 293 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 FBXL18Q96ME1 805 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 TRIM56Q9BRZ2 755 aaKnown RBP6.95□□□□□ -1.3
NUP88-212ENST00000576708 PHF7Q9BWX1 381 aaPredicted RBP6.95□□□□□ -1.3
NUP88-212ENST00000576708 GBP3Q9H0R5 595 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 NRDE2Q9H7Z3 1164 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 MINDY3Q9H8M7 445 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 ZFYVE1Q9HBF4 777 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 IFT122Q9HBG6 1241 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 KCNMB3Q9NPA1 279 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 CYP26B1Q9NR63 512 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 KIAA1522Q9P206 1035 aaPredicted RBP6.95□□□□□ -1.3
NUP88-212ENST00000576708 DNAJB4Q9UDY4 337 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 LZTS1Q9Y250 596 aa6.95□□□□□ -1.3
NUP88-212ENST00000576708 EPB41L2O43491 1005 aaKnown RBP6.94□□□□□ -1.3
NUP88-212ENST00000576708 MARCH6O60337 910 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 ZC3H11AO75152 810 aaKnown RBP eCLIP6.94□□□□□ -1.3
NUP88-212ENST00000576708 OFD1O75665 1012 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 DDHD2O94830 711 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 ALX3O95076 343 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 CTSBP07858 339 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 GALTP07902 379 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 EPCAMP16422 314 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 SFPQP23246 707 aaKnown RBP eCLIP6.94□□□□□ -1.3
NUP88-212ENST00000576708 MAOBP27338 520 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 PPM1AP35813 382 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 CHRNA4P43681 627 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 QARSP47897 775 aaKnown RBP6.94□□□□□ -1.3
NUP88-212ENST00000576708 SLC11A1P49279 550 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 DNM2P50570 870 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 ZXDAP98168 799 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 NHLH1Q02575 133 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 PPP2R5CQ13362 524 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 SMC1AQ14683 1233 aaKnown RBP6.94□□□□□ -1.3
NUP88-212ENST00000576708 EPHA7Q15375 998 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 NOMO2Q5JPE7 1267 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 UBXN11Q5T124 520 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 GALNT17Q6IS24 598 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 IGF2-ASQ6U949 168 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 TMEM184AQ6ZMB5 413 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 AGMOQ6ZNB7 445 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 FAM43BQ6ZT52 329 aaPredicted RBP6.94□□□□□ -1.3
NUP88-212ENST00000576708 ZNF410Q86VK4 478 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 MRPL43Q8N983 215 aaKnown RBP6.94□□□□□ -1.3
NUP88-212ENST00000576708 STK35Q8TDR2 534 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 FAM20AQ96MK3 541 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 CDCA3Q99618 268 aaPredicted RBP6.94□□□□□ -1.3
NUP88-212ENST00000576708 VN1R3Q9BXE9 311 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 BACH2Q9BYV9 841 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 SMOC2Q9H3U7 446 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 SOX17Q9H6I2 414 aaPredicted RBP6.94□□□□□ -1.3
NUP88-212ENST00000576708 NGRNQ9NPE2 291 aaKnown RBP6.94□□□□□ -1.3
NUP88-212ENST00000576708 CHST12Q9NRB3 414 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 FAM105AQ9NUU6 356 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 TBC1D13Q9NVG8 400 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 DACT1Q9NYF0 836 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 ORC3Q9UBD5 711 aaPredicted RBP6.94□□□□□ -1.3
NUP88-212ENST00000576708 PPM1HQ9ULR3 514 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 COL4A3BPQ9Y5P4 624 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 HCFC2Q9Y5Z7 792 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 STK36Q9NRP7 1315 aa6.94□□□□□ -1.3
NUP88-212ENST00000576708 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.93□□□□□ -1.3
NUP88-212ENST00000576708 ENC1O14682 589 aa6.93□□□□□ -1.3
NUP88-212ENST00000576708 JAK2O60674 1132 aa6.93□□□□□ -1.3
NUP88-212ENST00000576708 CDKL5O76039 1030 aa6.93□□□□□ -1.3
NUP88-212ENST00000576708 SLITRK3O94933 977 aa6.93□□□□□ -1.3
NUP88-212ENST00000576708 DLGAP3O95886 979 aa6.93□□□□□ -1.3
NUP88-212ENST00000576708 PDGFBP01127 241 aaPredicted RBP6.93□□□□□ -1.3
NUP88-212ENST00000576708 SSBP05455 408 aaKnown RBP eCLIP6.93□□□□□ -1.3
NUP88-212ENST00000576708 MYBP10242 640 aa6.93□□□□□ -1.3
NUP88-212ENST00000576708 HOXA11P31270 313 aaPredicted RBP6.93□□□□□ -1.3
NUP88-212ENST00000576708 YWHABP31946 246 aaKnown RBP6.93□□□□□ -1.3
NUP88-212ENST00000576708 ALDH7A1P49419 539 aaKnown RBP6.93□□□□□ -1.3
NUP88-212ENST00000576708 POLGP54098 1239 aaPredicted RBP6.93□□□□□ -1.3
NUP88-212ENST00000576708 VCPP55072 806 aaKnown RBP6.93□□□□□ -1.3
NUP88-212ENST00000576708 RNASELQ05823 741 aaKnown RBP6.93□□□□□ -1.3
NUP88-212ENST00000576708 PPP2R3AQ06190 1150 aa6.93□□□□□ -1.3
NUP88-212ENST00000576708 SPIRE1Q08AE8 756 aa6.93□□□□□ -1.3
NUP88-212ENST00000576708 LAMTOR4Q0VGL1 99 aa6.93□□□□□ -1.3
NUP88-212ENST00000576708 POU4F3Q15319 338 aa6.93□□□□□ -1.3
NUP88-212ENST00000576708 ME3Q16798 604 aa6.93□□□□□ -1.3
NUP88-212ENST00000576708 XKR9Q5GH70 373 aa6.93□□□□□ -1.3
NUP88-212ENST00000576708 RARS2Q5T160 578 aaKnown RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms