RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 BACE2Q9Y5Z0 518 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 NCOR1O75376 2440 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 CALUO43852 315 aaPredicted RBP10.59□□□□□ -0.71
CLK3-220ENST00000567992 EXOC3O60645 756 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 KIF20AO95235 890 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 GLUD1P00367 558 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 C1RP00736 705 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 ITGB3P05106 788 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 SRGAP2BP0DMP2 458 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 CD44P16070 742 aaKnown RBP10.59□□□□□ -0.71
CLK3-220ENST00000567992 POLR2BP30876 1174 aaKnown RBP10.59□□□□□ -0.71
CLK3-220ENST00000567992 PRCPP42785 496 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 MORC3Q14149 939 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 SURF1Q15526 300 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 SMAD2Q15796 467 aaKnown RBP10.59□□□□□ -0.71
CLK3-220ENST00000567992 PUS10Q3MIT2 529 aaKnown RBP10.59□□□□□ -0.71
CLK3-220ENST00000567992 PDXDC1Q6P996 788 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 WDR49Q8IV35 697 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 GLYCTKQ8IVS8 523 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 ZC3H3Q8IXZ2 948 aaKnown RBP10.59□□□□□ -0.71
CLK3-220ENST00000567992 C12orf76Q8N812 135 aaPredicted RBP10.59□□□□□ -0.71
CLK3-220ENST00000567992 ADAMTS19Q8TE59 1207 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 ZNF516Q92618 1163 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 NECAB3Q96P71 396 aaPredicted RBP10.59□□□□□ -0.71
CLK3-220ENST00000567992 POP1Q99575 1024 aaKnown RBP10.59□□□□□ -0.71
CLK3-220ENST00000567992 MAN1C1Q9NR34 630 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 DZANK1Q9NVP4 752 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 HOOK1Q9UJC3 728 aaKnown RBP10.59□□□□□ -0.71
CLK3-220ENST00000567992 FBXW11Q9UKB1 542 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 ITGA11Q9UKX5 1188 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 USP15Q9Y4E8 981 aaPredicted RBP10.59□□□□□ -0.71
CLK3-220ENST00000567992 CDY1Q9Y6F8 540 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 TRIOO75962 3097 aa10.59□□□□□ -0.71
CLK3-220ENST00000567992 AKAP3O75969 853 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 OAZ2O95190 189 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 SPATA31D3P0C874 917 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 DLATP10515 647 aaKnown RBP10.58□□□□□ -0.72
CLK3-220ENST00000567992 HOXB8P17481 243 aaPredicted RBP10.58□□□□□ -0.72
CLK3-220ENST00000567992 TYMPP19971 482 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 NR2F2P24468 414 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 TAF6P49848 677 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 PMS1P54277 932 aaKnown RBP10.58□□□□□ -0.72
CLK3-220ENST00000567992 MCCD1P59942 119 aaPredicted RBP10.58□□□□□ -0.72
CLK3-220ENST00000567992 CLDN10P78369 228 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 ROR1Q01973 937 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 RAB33AQ14088 237 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 EDRF1Q3B7T1 1238 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 C1orf220Q5T0J3 134 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 CENPPQ6IPU0 288 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 SLC8B1Q6J4K2 584 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 SPATA31D4Q6ZUB0 917 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 ANKS3Q6ZW76 656 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 PALB2Q86YC2 1186 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 ADSSL1Q8N142 457 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 PARD3BQ8TEW8 1205 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 CCDC127Q96BQ5 260 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 SENP8Q96LD8 212 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 RTP3Q9BQQ7 232 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 APOL5Q9BWW9 433 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 COL25A1Q9BXS0 654 aaPredicted RBP10.58□□□□□ -0.72
CLK3-220ENST00000567992 SFXN1Q9H9B4 322 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 FBXL5Q9UKA1 691 aa10.58□□□□□ -0.72
CLK3-220ENST00000567992 TIMM13Q9Y5L4 95 aaPredicted RBP10.58□□□□□ -0.72
CLK3-220ENST00000567992 WDR27A2RRH5 827 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 TRIM49BA6NDI0 452 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 LRRIQ3A6PVS8 624 aaPredicted RBP10.57□□□□□ -0.72
CLK3-220ENST00000567992 PPP1R3GB7ZBB8 358 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 MAPK13O15264 365 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 RFPL2O75678 378 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 VNN2O95498 520 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 CYP11A1P05108 521 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 TMEM191BP0C7N4 346 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 ODC1P11926 461 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 PAX3P23760 479 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 OR1D2P34982 312 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 DLG4P78352 724 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 CAMK4Q16566 473 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 DUOXA2Q1HG44 320 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 RARS2Q5T160 578 aaKnown RBP10.57□□□□□ -0.72
CLK3-220ENST00000567992 ISM2Q6H9L7 571 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 ZNF280DQ6N043 979 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 DSTYKQ6XUX3 929 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 TRAPPC11Q7Z392 1133 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 LRRC52Q8N7C0 313 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 APPL2Q8NEU8 664 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 CMASQ8NFW8 434 aaPredicted RBP10.57□□□□□ -0.72
CLK3-220ENST00000567992 GPT2Q8TD30 523 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 HDAC7Q8WUI4 952 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 CACTINQ8WUQ7 758 aaKnown RBP10.57□□□□□ -0.72
CLK3-220ENST00000567992 ZNF707Q96C28 371 aaPredicted RBP10.57□□□□□ -0.72
CLK3-220ENST00000567992 ZNF560Q96MR9 790 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 ADAM7Q9H2U9 754 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 CLSTN2Q9H4D0 955 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 AGAP1Q9UPQ3 857 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 NOTCH4Q99466 2003 aa10.57□□□□□ -0.72
CLK3-220ENST00000567992 KPNA7A9QM74 516 aa10.56□□□□□ -0.72
CLK3-220ENST00000567992 H7C4K7 107 aa10.56□□□□□ -0.72
CLK3-220ENST00000567992 BIN1O00499 593 aa10.56□□□□□ -0.72
CLK3-220ENST00000567992 ABLIM3O94929 683 aa10.56□□□□□ -0.72
CLK3-220ENST00000567992 TNNC2P02585 160 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms