RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 GPR62Q9BZJ7 368 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 TRIM9Q9C026 710 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 POLR3FQ9H1D9 316 aaPredicted RBP12.37□□□□□ -0.43
CLN3-226ENST00000567160 ZHX3Q9H4I2 956 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 BRD9Q9H8M2 597 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 LMAN1LQ9HAT1 526 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 GPRC5CQ9NQ84 441 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 XPNPEP1Q9NQW7 623 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 HOOK1Q9UJC3 728 aaKnown RBP12.37□□□□□ -0.43
CLN3-226ENST00000567160 PPME1Q9Y570 386 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 SF3B1O75533 1304 aaKnown RBP eCLIP12.37□□□□□ -0.43
CLN3-226ENST00000567160 SFI1A8K8P3 1242 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 CHURC1-FNTBB4DL54 471 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 TBCAO75347 108 aaKnown RBP12.36□□□□□ -0.43
CLN3-226ENST00000567160 TADA2AO75478 443 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 FAM13AO94988 1023 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 GUCY2CP25092 1073 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 FNTBP49356 437 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 KLHL40Q2TBA0 621 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 SKOR2Q2VWA4 1001 aaPredicted RBP12.36□□□□□ -0.43
CLN3-226ENST00000567160 UVSSAQ2YD98 709 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 STPG1Q5TH74 334 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 PDXDC1Q6P996 788 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 LRSAM1Q6UWE0 723 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 RTL10Q7L3V2 364 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 SRGAP1Q7Z6B7 1085 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 EXOC8Q8IYI6 725 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 ZNF687Q8N1G0 1237 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 SPEM1Q8N4L4 309 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 FAM160A2Q8N612 972 aaPredicted RBP12.36□□□□□ -0.43
CLN3-226ENST00000567160 IRF7Q92985 503 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 DNAJC19Q96DA6 116 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 GAD1Q99259 594 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 LSM14BQ9BX40 385 aaKnown RBP12.36□□□□□ -0.43
CLN3-226ENST00000567160 IFT122Q9HBG6 1241 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 KCND2Q9NZV8 630 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 TMEM63CQ9P1W3 806 aa12.36□□□□□ -0.43
CLN3-226ENST00000567160 MRPS23Q9Y3D9 190 aaKnown RBP12.36□□□□□ -0.43
CLN3-226ENST00000567160 F8W810 466 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 ERLIN2O94905 339 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 ZNF806P0C7X5 589 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 SCNN1GP51170 649 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 SATB1Q01826 763 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 NCBP1Q09161 790 aaKnown RBP12.35□□□□□ -0.43
CLN3-226ENST00000567160 DPYDQ12882 1025 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 MAPK7Q13164 816 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 LRRC32Q14392 662 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 SF3A2Q15428 464 aaKnown RBP12.35□□□□□ -0.43
CLN3-226ENST00000567160 UBXN11Q5T124 520 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 CCDC183Q5T5S1 534 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 PSAPL1Q6NUJ1 521 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 KSR1Q8IVT5 923 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 DAW1Q8N136 415 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 SLC7A14Q8TBB6 771 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 TCP11Q8WWU5 503 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 ING5Q8WYH8 240 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 CCDC51Q96ER9 411 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 LOXL4Q96JB6 756 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 TTPALQ9BTX7 342 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 TRMT61BQ9BVS5 477 aaKnown RBP12.35□□□□□ -0.43
CLN3-226ENST00000567160 TIPINQ9BVW5 301 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 PANK4Q9NVE7 773 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 LHX6Q9UPM6 363 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 IPPQ9Y573 584 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 COL4A3BPQ9Y5P4 624 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 SDK1Q7Z5N4 2213 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 NOTCH4Q99466 2003 aa12.35□□□□□ -0.43
CLN3-226ENST00000567160 SHISA7A6NL88 538 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 PAPSS2O95340 614 aaPredicted RBP12.34□□□□□ -0.43
CLN3-226ENST00000567160 RPN1P04843 607 aaKnown RBP12.34□□□□□ -0.43
CLN3-226ENST00000567160 MYL1P05976 194 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 AXLP30530 894 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 HOXA11P31270 313 aaPredicted RBP12.34□□□□□ -0.43
CLN3-226ENST00000567160 SRSF5Q13243 272 aaKnown RBP12.34□□□□□ -0.43
CLN3-226ENST00000567160 PCBP1Q15365 356 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLN3-226ENST00000567160 PSMD5Q16401 504 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 CNNM4Q6P4Q7 775 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 C1orf228Q6PIY5 440 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 PRSS55Q6UWB4 352 aaPredicted RBP12.34□□□□□ -0.43
CLN3-226ENST00000567160 SFR1Q86XK3 245 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 CCDC65Q8IXS2 484 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 MYCT1Q8N699 235 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 SMG8Q8ND04 991 aaKnown RBP12.34□□□□□ -0.43
CLN3-226ENST00000567160 ASAP3Q8TDY4 903 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 PSPC1Q8WXF1 523 aaKnown RBP12.34□□□□□ -0.43
CLN3-226ENST00000567160 PIK3R5Q8WYR1 880 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 BSNDQ8WZ55 320 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 KIFAP3Q92845 792 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 SMARCE1Q969G3 411 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 SYAP1Q96A49 352 aaPredicted RBP12.34□□□□□ -0.43
CLN3-226ENST00000567160 MCRS1Q96EZ8 462 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 DRC1Q96MC2 740 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 ZFP42Q96MM3 310 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 CLSTN3Q9BQT9 956 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 ADAM33Q9BZ11 813 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 PLA2G2FQ9BZM2 168 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 TRIM6Q9C030 488 aaPredicted RBP12.34□□□□□ -0.43
CLN3-226ENST00000567160 ARRDC1-AS1Q9H2J1 176 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 ZFP14Q9HCL3 533 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 TRPV5Q9NQA5 729 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms