RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TRAPPC3O43617 180 aa21.08■□□□□ 0.97
CLN3-225ENST00000566824 VNN1O95497 513 aa21.08■□□□□ 0.97
CLN3-225ENST00000566824 C4BPAP04003 597 aaKnown RBP21.08■□□□□ 0.97
CLN3-225ENST00000566824 LTBRP36941 435 aa21.08■□□□□ 0.97
CLN3-225ENST00000566824 TAF6P49848 677 aa21.08■□□□□ 0.97
CLN3-225ENST00000566824 MCCD1P59942 119 aaPredicted RBP21.08■□□□□ 0.97
CLN3-225ENST00000566824 ELAVL2Q12926 359 aaKnown RBP21.08■□□□□ 0.97
CLN3-225ENST00000566824 ADAM15Q13444 863 aa21.08■□□□□ 0.97
CLN3-225ENST00000566824 KCNC3Q14003 757 aa21.08■□□□□ 0.97
CLN3-225ENST00000566824 CTC1Q2NKJ3 1217 aa21.08■□□□□ 0.97
CLN3-225ENST00000566824 VARS2Q5ST30 1063 aaKnown RBP21.08■□□□□ 0.97
CLN3-225ENST00000566824 DSTYKQ6XUX3 929 aa21.08■□□□□ 0.97
CLN3-225ENST00000566824 MLKLQ8NB16 471 aa21.08■□□□□ 0.97
CLN3-225ENST00000566824 FEZF2Q8TBJ5 459 aa21.08■□□□□ 0.97
CLN3-225ENST00000566824 SLC22A17Q8WUG5 538 aa21.08■□□□□ 0.97
CLN3-225ENST00000566824 STK39Q9UEW8 545 aa21.08■□□□□ 0.97
CLN3-225ENST00000566824 RWDD2AQ9UIY3 292 aa21.08■□□□□ 0.97
CLN3-225ENST00000566824 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.08■□□□□ 0.97
CLN3-225ENST00000566824 EPCAMP16422 314 aa21.07■□□□□ 0.96
CLN3-225ENST00000566824 RBP5P82980 135 aa21.07■□□□□ 0.96
CLN3-225ENST00000566824 BFSP1Q12934 665 aa21.07■□□□□ 0.96
CLN3-225ENST00000566824 MRPL58Q14197 206 aaKnown RBP21.07■□□□□ 0.96
CLN3-225ENST00000566824 PSMD5Q16401 504 aa21.07■□□□□ 0.96
CLN3-225ENST00000566824 EFHBQ8N7U6 833 aa21.07■□□□□ 0.96
CLN3-225ENST00000566824 MKNK1Q9BUB5 465 aa21.07■□□□□ 0.96
CLN3-225ENST00000566824 CLDND1Q9NY35 253 aa21.07■□□□□ 0.96
CLN3-225ENST00000566824 MTCL1Q9Y4B5 1905 aaKnown RBP21.06■□□□□ 0.96
CLN3-225ENST00000566824 BICDL2A1A5D9 508 aa21.06■□□□□ 0.96
CLN3-225ENST00000566824 SLC16A3O15427 465 aaKnown RBP21.06■□□□□ 0.96
CLN3-225ENST00000566824 LRRN2O75325 713 aa21.06■□□□□ 0.96
CLN3-225ENST00000566824 TBX10O75333 385 aa21.06■□□□□ 0.96
CLN3-225ENST00000566824 GCLMP48507 274 aa21.06■□□□□ 0.96
CLN3-225ENST00000566824 MYL6P60660 151 aa21.06■□□□□ 0.96
CLN3-225ENST00000566824 C15orf39Q6ZRI6 1047 aa21.06■□□□□ 0.96
CLN3-225ENST00000566824 INTS8Q75QN2 995 aaKnown RBP21.06■□□□□ 0.96
CLN3-225ENST00000566824 SV2AQ7L0J3 742 aa21.06■□□□□ 0.96
CLN3-225ENST00000566824 LRRC52Q8N7C0 313 aa21.06■□□□□ 0.96
CLN3-225ENST00000566824 CEP63Q96MT8 703 aa21.06■□□□□ 0.96
CLN3-225ENST00000566824 SRRTQ9BXP5 876 aaKnown RBP21.06■□□□□ 0.96
CLN3-225ENST00000566824 MMRN2Q9H8L6 949 aa21.06■□□□□ 0.96
CLN3-225ENST00000566824 CLEC1BQ9P126 229 aa21.06■□□□□ 0.96
CLN3-225ENST00000566824 MTRRQ9UBK8 725 aa21.06■□□□□ 0.96
CLN3-225ENST00000566824 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.05■□□□□ 0.96
CLN3-225ENST00000566824 KPNA7A9QM74 516 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 CYB561D2O14569 222 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 SYN3O14994 580 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 TBC1D4O60343 1298 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 SPATA31D3P0C874 917 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 EPB41P11171 864 aaKnown RBP21.05■□□□□ 0.96
CLN3-225ENST00000566824 KRT13P13646 458 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 KLRC2P26717 231 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 TFF2Q03403 129 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 KLHL40Q2TBA0 621 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 ZACNQ401N2 412 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 FOXR2Q6PJQ5 311 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 EP400NLQ6ZTU2 488 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 SPATA31D4Q6ZUB0 917 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 C11orf57Q6ZUT1 292 aaPredicted RBP21.05■□□□□ 0.96
CLN3-225ENST00000566824 FILIP1Q7Z7B0 1213 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 PALB2Q86YC2 1186 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 PABPC5Q96DU9 382 aaKnown RBP21.05■□□□□ 0.96
CLN3-225ENST00000566824 HPDLQ96IR7 371 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 EMILIN2Q9BXX0 1053 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 XYLT2Q9H1B5 865 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 UBE2ZQ9H832 354 aaPredicted RBP21.05■□□□□ 0.96
CLN3-225ENST00000566824 FNIP2Q9P278 1114 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 BARX2Q9UMQ3 279 aaPredicted RBP21.05■□□□□ 0.96
CLN3-225ENST00000566824 HCFC2Q9Y5Z7 792 aa21.05■□□□□ 0.96
CLN3-225ENST00000566824 SLC34A2O95436 690 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 OR1D2P34982 312 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 CLCN4P51793 760 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 BIRC3Q13489 604 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 BMS1Q14692 1282 aaKnown RBP21.04■□□□□ 0.96
CLN3-225ENST00000566824 SV2CQ496J9 727 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 WSCD1Q658N2 575 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 IRF2BP1Q8IU81 584 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 GPR65Q8IYL9 337 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 PPP2R3CQ969Q6 453 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 ZNF560Q96MR9 790 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 RTP3Q9BQQ7 232 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.04■□□□□ 0.966e-9■■■■■ 134.6
CLN3-225ENST00000566824 FBXL5Q9UKA1 691 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 L1RE1Q9UN81 338 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 SSX2IPQ9Y2D8 614 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 CDY1Q9Y6F8 540 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 H3BQ06 376 aaPredicted RBP21.04■□□□□ 0.96
CLN3-225ENST00000566824 IKBKBO14920 756 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 PHACTR2O75167 634 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 CLUL1Q15846 466 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 ANKS3Q6ZW76 656 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 TMEM209Q96SK2 561 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 CDCA3Q99618 268 aaPredicted RBP21.04■□□□□ 0.96
CLN3-225ENST00000566824 ARMCX3Q9UH62 379 aaPredicted RBP21.04■□□□□ 0.96
CLN3-225ENST00000566824 SNX9Q9Y5X1 595 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 BACE2Q9Y5Z0 518 aa21.04■□□□□ 0.96
CLN3-225ENST00000566824 XIRP2A4UGR9 3374 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 HCRTO43612 131 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 OAZ2O95190 189 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 CYP11A1P05108 521 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 ODC1P11926 461 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms