RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TULP1O00294 542 aaPredicted RBP18.25■□□□□ 0.51
CLK3-210ENST00000563112 NFICP08651 508 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 TYMPP19971 482 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 ME1P48163 572 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 AARSP49588 968 aaKnown RBP eCLIP18.25■□□□□ 0.51
CLK3-210ENST00000563112 NUBP1P53384 320 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 PTPN5P54829 565 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 LILRA4P59901 499 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 KCNA1Q09470 495 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 IER5LQ5T953 404 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 C9orf57Q5W0N0 161 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 MTSS1LQ765P7 747 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 NT5DC4Q86YG4 428 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 ELMOD1Q8N336 334 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 FGF13Q92913 245 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 DHX58Q96C10 678 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 HCFC1R1Q9NWW0 138 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 FAM13BQ9NYF5 915 aa18.25■□□□□ 0.51
CLK3-210ENST00000563112 OR6C75A6NL08 312 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 PPEF2O14830 753 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 NARSO43776 548 aaKnown RBP18.24■□□□□ 0.51
CLK3-210ENST00000563112 SEC24AO95486 1093 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 SRFP11831 508 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 ODC1P11926 461 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 GARTP22102 1010 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 ADSSP30520 456 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 ADCY1Q08828 1119 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 HTR4Q13639 388 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 E2F4Q16254 413 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 ASTLQ6HA08 431 aaPredicted RBP18.24■□□□□ 0.51
CLK3-210ENST00000563112 OVOS1Q6IE37 1185 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 IQCEQ6IPM2 695 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 SHC4Q6S5L8 630 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 TMEM130Q8N3G9 435 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 FLCNQ8NFG4 579 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 ITFG1Q8TB96 612 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 SENP8Q96LD8 212 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 FAM213AQ9BRX8 229 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 IKZF4Q9H2S9 585 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 KBTBD4Q9NVX7 518 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 DPP3Q9NY33 737 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 WNT16Q9UBV4 365 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 INSL5Q9Y5Q6 135 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 NUMBLQ9Y6R0 609 aa18.24■□□□□ 0.51
CLK3-210ENST00000563112 PIRO00625 290 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 ZNF197O14709 1029 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 PRPF6O94906 941 aaKnown RBP18.23■□□□□ 0.51
CLK3-210ENST00000563112 RHOP08100 348 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 CFHP08603 1231 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 RFX1P22670 979 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 CLCN5P51795 746 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 CASP5P51878 434 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 ASIC1P78348 528 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 NHLH1Q02575 133 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 ARMCX5Q6P1M9 558 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 CRELD2Q6UXH1 353 aaPredicted RBP18.23■□□□□ 0.51
CLK3-210ENST00000563112 SIX5Q8N196 739 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 PRSS33Q8NF86 280 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 CACTINQ8WUQ7 758 aaKnown RBP18.23■□□□□ 0.51
CLK3-210ENST00000563112 ZNF512Q96ME7 567 aaPredicted RBP18.23■□□□□ 0.51
CLK3-210ENST00000563112 TRIM9Q9C026 710 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 IRF2BPLQ9H1B7 796 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 MAGEF1Q9HAY2 307 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 AVENQ9NQS1 362 aaPredicted RBP18.23■□□□□ 0.51
CLK3-210ENST00000563112 DSEQ9UL01 958 aa18.23■□□□□ 0.51
CLK3-210ENST00000563112 KMT2EQ8IZD2 1858 aa18.22■□□□□ 0.51
CLK3-210ENST00000563112 ANO9A1A5B4 782 aa18.22■□□□□ 0.51
CLK3-210ENST00000563112 STK25O00506 426 aa18.22■□□□□ 0.51
CLK3-210ENST00000563112 TAF6P49848 677 aa18.22■□□□□ 0.51
CLK3-210ENST00000563112 MYBPC2Q14324 1141 aa18.22■□□□□ 0.51
CLK3-210ENST00000563112 CYP4A22Q5TCH4 519 aa18.22■□□□□ 0.51
CLK3-210ENST00000563112 RNF19BQ6ZMZ0 732 aa18.22■□□□□ 0.51
CLK3-210ENST00000563112 METTL23Q86XA0 190 aa18.22■□□□□ 0.51
CLK3-210ENST00000563112 NOC3LQ8WTT2 800 aaKnown RBP18.22■□□□□ 0.51
CLK3-210ENST00000563112 SAAL1Q96ER3 474 aa18.22■□□□□ 0.51
CLK3-210ENST00000563112 CORO1BQ9BR76 489 aa18.22■□□□□ 0.51
CLK3-210ENST00000563112 PYM1Q9BRP8 204 aaKnown RBP18.22■□□□□ 0.51
CLK3-210ENST00000563112 PCDHA7Q9UN72 937 aa18.22■□□□□ 0.51
CLK3-210ENST00000563112 ANK1P16157 1881 aa18.22■□□□□ 0.51
CLK3-210ENST00000563112 KIAA0391O15091 583 aaKnown RBP18.21■□□□□ 0.51
CLK3-210ENST00000563112 POLR2DO15514 142 aaKnown RBP18.21■□□□□ 0.51
CLK3-210ENST00000563112 EXTL3O43909 919 aa18.21■□□□□ 0.51
CLK3-210ENST00000563112 TWF1Q12792 350 aa18.21■□□□□ 0.51
CLK3-210ENST00000563112 GPR17Q13304 367 aa18.21■□□□□ 0.51
CLK3-210ENST00000563112 PLD1Q13393 1074 aa18.21■□□□□ 0.51
CLK3-210ENST00000563112 PARM1Q6UWI2 310 aa18.21■□□□□ 0.51
CLK3-210ENST00000563112 PDZD4Q76G19 769 aaPredicted RBP18.21■□□□□ 0.51
CLK3-210ENST00000563112 BRSK2Q8IWQ3 736 aa18.21■□□□□ 0.51
CLK3-210ENST00000563112 NPAS3Q8IXF0 933 aa18.21■□□□□ 0.51
CLK3-210ENST00000563112 ING5Q8WYH8 240 aa18.21■□□□□ 0.51
CLK3-210ENST00000563112 FGF14Q92915 247 aa18.21■□□□□ 0.51
CLK3-210ENST00000563112 RBAKQ9NYW8 714 aaPredicted RBP18.21■□□□□ 0.51
CLK3-210ENST00000563112 GDE1Q9NZC3 331 aa18.21■□□□□ 0.51
CLK3-210ENST00000563112 CYB561D2O14569 222 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 SPTLC1O15269 473 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 OR4Q2P0C623 313 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 PNPLA4P41247 253 aa18.2■□□□□ 0.5
CLK3-210ENST00000563112 TFAMQ00059 246 aaKnown RBP18.2■□□□□ 0.5
CLK3-210ENST00000563112 DNM1Q05193 864 aaKnown RBP18.2■□□□□ 0.5
CLK3-210ENST00000563112 PKP1Q13835 747 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms