RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 STK17AQ9UEE5 414 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 AFF4Q9UHB7 1163 aaKnown RBP11.1□□□□□ -0.63
LDLR-214ENST00000560628 AGO2Q9UKV8 859 aaKnown RBP11.1□□□□□ -0.63
LDLR-214ENST00000560628 SIT1Q9Y3P8 196 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 INSL5Q9Y5Q6 135 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 CACNA1HO95180 2353 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 A0A087X0B3 334 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 K7ELQ4 463 aaPredicted RBP11.09□□□□□ -0.63
LDLR-214ENST00000560628 SPTLC1O15269 473 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 STX6O43752 255 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 LRRN2O75325 713 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 VNN2O95498 520 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 MYL4P12829 197 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 IDEP14735 1019 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 GJA1P17302 382 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 TXLNAP40222 546 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 CCR2P41597 374 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 AARSP49588 968 aaKnown RBP eCLIP11.09□□□□□ -0.63
LDLR-214ENST00000560628 LILRA4P59901 499 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 KCNA1Q09470 495 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 DUSP4Q13115 394 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 TMEM132DQ14C87 1099 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 SLC39A14Q15043 492 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 ANGPT1Q15389 498 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 CYP4A22Q5TCH4 519 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 FOXD4L5Q5VV16 416 aaPredicted RBP11.09□□□□□ -0.63
LDLR-214ENST00000560628 C9orf57Q5W0N0 161 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 TANGO2Q6ICL3 276 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 SLFN12LQ6IEE8 588 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 IQCEQ6IPM2 695 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 PHLDB3Q6NSJ2 640 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 PDZD4Q76G19 769 aaPredicted RBP11.09□□□□□ -0.63
LDLR-214ENST00000560628 FRMD5Q7Z6J6 570 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 CD302Q8IX05 232 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 ELMOD1Q8N336 334 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 FOXD4L4Q8WXT5 416 aaPredicted RBP11.09□□□□□ -0.63
LDLR-214ENST00000560628 POMGNT1Q8WZA1 660 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 DNAJC19Q96DA6 116 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 SENP8Q96LD8 212 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 ZSWIM3Q96MP5 696 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 TSPAN18Q96SJ8 248 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 TMEM209Q96SK2 561 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 FOXQ1Q9C009 403 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 MRPL44Q9H9J2 332 aaKnown RBP11.09□□□□□ -0.63
LDLR-214ENST00000560628 AVENQ9NQS1 362 aaPredicted RBP11.09□□□□□ -0.63
LDLR-214ENST00000560628 GDE1Q9NZC3 331 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 SLC27A5Q9Y2P5 690 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 NOTCH4Q99466 2003 aa11.09□□□□□ -0.63
LDLR-214ENST00000560628 PIRO00625 290 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 ZNF197O14709 1029 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 CD72P21854 359 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 ADSSP30520 456 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 ABCD1P33897 745 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 STAT6P42226 847 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 STARD6P59095 220 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 FAM78AQ5JUQ0 283 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 PRSS36Q5K4E3 855 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 OVOS1Q6IE37 1185 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 CRELD2Q6UXH1 353 aaPredicted RBP11.08□□□□□ -0.64
LDLR-214ENST00000560628 CCDC73Q6ZRK6 1079 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 ASCL5Q7RTU5 278 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 PDILTQ8N807 584 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 ATAD1Q8NBU5 361 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 ZSWIM2Q8NEG5 633 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 SHDQ96IW2 340 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 CRISPLD1Q9H336 500 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 ST6GALNAC4Q9H4F1 302 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 ZSCAN16Q9H4T2 348 aaPredicted RBP11.08□□□□□ -0.64
LDLR-214ENST00000560628 DPP3Q9NY33 737 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 MTF2Q9Y483 593 aaPredicted RBP11.08□□□□□ -0.64
LDLR-214ENST00000560628 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.08□□□□□ -0.64
LDLR-214ENST00000560628 STYXL1Q9Y6J8 313 aa11.08□□□□□ -0.64
LDLR-214ENST00000560628 ANO9A1A5B4 782 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 OR6C75A6NL08 312 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 PROB1E7EW31 1015 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 MOSPD3O75425 235 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 ECI2O75521 394 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 PPP1R37O75864 691 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 SOAT2O75908 522 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 GCNT3O95395 438 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 GLULP15104 373 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 GAP43P17677 238 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 TYMPP19971 482 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 NBL1P41271 181 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 VIPR2P41587 438 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 CASP5P51878 434 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 GPR17Q13304 367 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 GRM2Q14416 872 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 UBXN2BQ14CS0 331 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 POSTNQ15063 836 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 STK38Q15208 465 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 MLF2Q15773 248 aaPredicted RBP11.07□□□□□ -0.64
LDLR-214ENST00000560628 ARMCX5Q6P1M9 558 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 GPIHBP1Q8IV16 184 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 SYCP3Q8IZU3 236 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 TTC9BQ8N6N2 239 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 NOC3LQ8WTT2 800 aaKnown RBP11.07□□□□□ -0.64
LDLR-214ENST00000560628 SAAL1Q96ER3 474 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 ACCSQ96QU6 501 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 FAM213AQ9BRX8 229 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms