RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 GYPEP15421 78 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 CNTFP26441 200 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 RGS19P49795 217 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 GNAI1P63096 354 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 CREMQ03060 361 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 DUSP2Q05923 314 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 FOXO1Q12778 655 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 CTBP1Q13363 440 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 SMAD4Q13485 552 aaKnown RBP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 CNGB1Q14028 1251 aaPredicted RBP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 HABP2Q14520 560 aaPredicted RBP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 INTS11Q5TA45 600 aaKnown RBP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 AFMIDQ63HM1 303 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 CNKSR3Q6P9H4 555 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 TRMT10BQ6PF06 316 aaKnown RBP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 CATSPERGQ6ZRH7 1159 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 ZNF572Q7Z3I7 529 aaPredicted RBP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 B3GNT8Q7Z7M8 397 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 IRF2BP1Q8IU81 584 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 PLXDC1Q8IUK5 500 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 LRRC56Q8IYG6 542 aaPredicted RBP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 RTKN2Q8IZC4 609 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 MPP5Q8N3R9 675 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 GALNT15Q8N3T1 639 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 PLA2G15Q8NCC3 412 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 FLAD1Q8NFF5 587 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 OR56A3Q8NH54 315 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 GFM2Q969S9 779 aaKnown RBP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 MYOCQ99972 504 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 FAM167BQ9BTA0 163 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 C11orf84Q9BUA3 381 aaPredicted RBP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 STK31Q9BXU1 1019 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 ZNF518BQ9C0D4 1074 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 TM7SF3Q9NS93 570 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 SMC4Q9NTJ3 1288 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 TBC1D23Q9NUY8 699 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 SIDT1Q9NXL6 827 aaKnown RBP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 GGA3Q9NZ52 723 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 BCCIPQ9P287 314 aaKnown RBP eCLIP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 IFT80Q9P2H3 777 aaPredicted RBP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 IGSF9Q9P2J2 1179 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 ZDHHC8Q9ULC8 765 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 FAM184BQ9ULE4 1060 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 VWA7Q9Y334 891 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 RBM8AQ9Y5S9 174 aaKnown RBP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 ATRNL1Q5VV63 1379 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 PRSS29PA6NIE9 313 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 PYCARD-AS1I3L0S3 204 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 BIN1O00499 593 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 PIP5K1BO14986 540 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 KIAA0391O15091 583 aaKnown RBP3.68□□□□□ -1.82
TRAV28-201ENST00000557548 TEX33O43247 280 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 RNASEH2AO75792 299 aaKnown RBP3.68□□□□□ -1.82
TRAV28-201ENST00000557548 TOX4O94842 621 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 CHGBP05060 677 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 POLBP06746 335 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 HSP90AA1P07900 732 aaKnown RBP3.68□□□□□ -1.82
TRAV28-201ENST00000557548 GJB1P08034 283 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 CKMT1AP12532 417 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 ALOX15P16050 662 aaPredicted RBP3.68□□□□□ -1.82
TRAV28-201ENST00000557548 KLRC1P26715 233 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 POLD1P28340 1107 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 ETV4P43268 484 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 KIR2DL3P43628 341 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 MEOX1P50221 254 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 MLLT6P55198 1093 aaPredicted RBP3.68□□□□□ -1.82
TRAV28-201ENST00000557548 FOXO4P98177 505 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 MPP1Q00013 466 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 SP140Q13342 867 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 TOP3AQ13472 1001 aaPredicted RBP3.68□□□□□ -1.82
TRAV28-201ENST00000557548 RAB32Q13637 225 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 PTK2BQ14289 1009 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 KIF22Q14807 665 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 PCOLCEQ15113 449 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 TARBP2Q15633 366 aaKnown RBP3.68□□□□□ -1.82
TRAV28-201ENST00000557548 RAB30Q15771 203 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 ATP2B3Q16720 1220 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 PABPC1LQ4VXU2 614 aaKnown RBP3.68□□□□□ -1.82
TRAV28-201ENST00000557548 ARHGAP15Q53QZ3 475 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 DCAF12L1Q5VU92 463 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 LMBRD2Q68DH5 695 aaPredicted RBP3.68□□□□□ -1.82
TRAV28-201ENST00000557548 TRIM68Q6AZZ1 485 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 FAM180BQ6P0A1 224 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 KRBA2Q6ZNG9 492 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 C1orf122Q6ZSJ8 110 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 LARP4Q71RC2 724 aaKnown RBP eCLIP3.68□□□□□ -1.82
TRAV28-201ENST00000557548 ZNF605Q86T29 641 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 GLIS1Q8NBF1 620 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 KYQ8NBH2 561 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 CYP2W1Q8TAV3 490 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 FAM71BQ8TC56 605 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 ZCCHC14Q8WYQ9 949 aaKnown RBP3.68□□□□□ -1.82
TRAV28-201ENST00000557548 GCDHQ92947 438 aaPredicted RBP3.68□□□□□ -1.82
TRAV28-201ENST00000557548 CEP95Q96GE4 821 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 LIN37Q96GY3 246 aaPredicted RBP3.68□□□□□ -1.82
TRAV28-201ENST00000557548 FAM84AQ96KN4 292 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 NEUROD6Q96NK8 337 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 NOX5Q96PH1 765 aa3.68□□□□□ -1.82
TRAV28-201ENST00000557548 SEC62Q99442 399 aaKnown RBP3.68□□□□□ -1.82
TRAV28-201ENST00000557548 GDF15Q99988 308 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms