RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 NCK2O43639 380 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 BUB1BO60566 1050 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-229ENST00000557348 TSPAN1O60635 241 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 DUSP11O75319 330 aaKnown RBP13.49□□□□□ -0.25
SHMT2-229ENST00000557348 VTNP04004 478 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 GJB1P08034 283 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 CYP2B6P20813 491 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 GNA15P30679 374 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 NSFP46459 744 aaKnown RBP13.49□□□□□ -0.25
SHMT2-229ENST00000557348 PSEN2P49810 448 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 WNT7BP56706 349 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 CENPCQ03188 943 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 CRHR2Q13324 411 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 LIN9Q5TKA1 542 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 EEF1DP3Q658K8 133 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 CCDC50Q8IVM0 306 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 CNPY4Q8N129 248 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 NOA1Q8NC60 698 aaKnown RBP13.49□□□□□ -0.25
SHMT2-229ENST00000557348 RBBP8NLQ8NC74 664 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-229ENST00000557348 ZNF653Q96CK0 615 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 ACAP3Q96P50 834 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 PLVAPQ9BX97 442 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 ZNF518BQ9C0D4 1074 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 ITGA11Q9UKX5 1188 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 ABT1Q9ULW3 272 aaKnown RBP13.49□□□□□ -0.25
SHMT2-229ENST00000557348 GOLGA6CA6NDK9 693 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 TMEM88BA6NKF7 163 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 PGRMC1O00264 195 aaKnown RBP13.48□□□□□ -0.25
SHMT2-229ENST00000557348 STAU1O95793 577 aaKnown RBP13.48□□□□□ -0.25
SHMT2-229ENST00000557348 CYP1A1P04798 512 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-229ENST00000557348 RHOXF2BP0C7M4 288 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 GOLGA6DP0CG33 693 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 ARF4P18085 180 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-229ENST00000557348 GRM5P41594 1212 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 ZNF132P52740 706 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 GYS2P54840 703 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 NOTUMQ6P988 496 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 EMBQ6PCB8 327 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 TMEM270Q6UE05 265 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 PALB2Q86YC2 1186 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 RASGEF1CQ8N431 466 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 UBR7Q8N806 425 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 PCDHB18PQ96TA0 734 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 SH3GL2Q99962 352 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 RHOXF2Q9BQY4 288 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 WNT8AQ9H1J5 351 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 CYP3A43Q9HB55 503 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 APOBEC3GQ9HC16 384 aaKnown RBP13.48□□□□□ -0.25
SHMT2-229ENST00000557348 SETD4Q9NVD3 440 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 GOLGA6AQ9NYA3 693 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 TAS2R14Q9NYV8 317 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 FLRT1Q9NZU1 646 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 CEP83Q9Y592 693 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 NUB1Q9Y5A7 615 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 SCINQ9Y6U3 715 aa13.48□□□□□ -0.25
SHMT2-229ENST00000557348 GPR25O00155 361 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 PDE2AO00408 941 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-229ENST00000557348 EIF3HO15372 352 aaKnown RBP eCLIP13.47□□□□□ -0.25
SHMT2-229ENST00000557348 ADCY6O43306 1168 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 MED7O43513 233 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 FSBPO95073 299 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 CXCL8P10145 99 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 CYP2C9P11712 490 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 UNGP13051 313 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-229ENST00000557348 NOGQ13253 232 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 TMEM132DQ14C87 1099 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 FSCN1Q16658 493 aaKnown RBP13.47□□□□□ -0.25
SHMT2-229ENST00000557348 SEZ6Q53EL9 994 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 ZNF667Q5HYK9 610 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 TAF2Q6P1X5 1199 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 SLC27A1Q6PCB7 646 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 CCNI2Q6ZMN8 369 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-229ENST00000557348 USP38Q8NB14 1042 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 ZNF564Q8TBZ8 553 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-229ENST00000557348 KAT2BQ92831 832 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 ARHGEF26Q96DR7 871 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.47□□□□□ -0.257e-8■■□□□ 13.7
SHMT2-229ENST00000557348 CAPS2Q9BXY5 557 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 ADAMTS10Q9H324 1103 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 MRPL47Q9HD33 250 aaKnown RBP13.47□□□□□ -0.25
SHMT2-229ENST00000557348 DONSONQ9NYP3 566 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-229ENST00000557348 MROH7Q68CQ1 1323 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 C17orf102A2RUQ5 167 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 MYL3P08590 195 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 PAEPP09466 180 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 IQCF3P0C7M6 154 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 CXCR5P32302 372 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 MAP2K2P36507 400 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 IRAK1P51617 712 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 YARSP54577 528 aaKnown RBP13.47□□□□□ -0.25
SHMT2-229ENST00000557348 MYL6P60660 151 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 C1QBPQ07021 282 aaKnown RBP13.47□□□□□ -0.25
SHMT2-229ENST00000557348 PRAMEF19Q5SWL8 479 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 SPOPLQ6IQ16 392 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 C8orf74Q6P047 294 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 CATSPER4Q7RTX7 472 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 MCOLN2Q8IZK6 566 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 DNAI2Q9GZS0 605 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 OSGEPQ9NPF4 335 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms