RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 CD276Q5ZPR3 534 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 GPRC5AQ8NFJ5 357 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 FERMT2Q96AC1 680 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 CERS4Q9HA82 394 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.36□□□□□ -1.71
LIMA1-206ENST00000550611 SLC2A4RGQ9NR83 387 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 TLR9Q9NR96 1032 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 GNL3LQ9NVN8 582 aaKnown RBP4.36□□□□□ -1.71
LIMA1-206ENST00000550611 PARPBPQ9NWS1 579 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 DDX41Q9UJV9 622 aaKnown RBP4.36□□□□□ -1.71
LIMA1-206ENST00000550611 NR2E1Q9Y466 385 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 NPFFR2Q9Y5X5 522 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 MROH7-TTC4A0A0A0MT08 1334 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 PRRC2BQ5JSZ5 2229 aaKnown RBP4.36□□□□□ -1.71
LIMA1-206ENST00000550611 DMXL1Q9Y485 3027 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 LTBP2Q14767 1821 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 KRTAP23-1A1A580 65 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 C19orf81C9J6K1 198 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 SLC27A2O14975 620 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 CNMDO75829 334 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 ITGAVP06756 1048 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 HOXC6P09630 235 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 ADORA1P30542 326 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 MAPK4P31152 587 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 ZEB1P37275 1124 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-206ENST00000550611 IL15P40933 162 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-206ENST00000550611 ETV4P43268 484 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 RABGGTBP53611 331 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 TIMM10P62072 90 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 HERVK_113P62684 666 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 MECOMQ03112 1051 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 TLE2Q04725 743 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 TCF15Q12870 199 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 PICALMQ13492 652 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 SPTY2D1Q68D10 685 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-206ENST00000550611 GPR142Q7Z601 462 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 ADGRE4PQ86SQ3 457 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 TMPRSS6Q8IU80 811 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 ZGPATQ8N5A5 531 aaKnown RBP4.35□□□□□ -1.71
LIMA1-206ENST00000550611 MICAL1Q8TDZ2 1067 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 SOCS4Q8WXH5 440 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 NSUN4Q96CB9 384 aaKnown RBP4.35□□□□□ -1.71
LIMA1-206ENST00000550611 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.35□□□□□ -1.71
LIMA1-206ENST00000550611 LGR4Q9BXB1 951 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 PORCNQ9H237 461 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 DNAJC18Q9H819 358 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 PLA2G3Q9NZ20 509 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 FLRT1Q9NZU1 646 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 HERC5Q9UII4 1024 aaKnown RBP4.35□□□□□ -1.71
LIMA1-206ENST00000550611 EFR3BQ9Y2G0 817 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 GIT1Q9Y2X7 761 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 REXO2Q9Y3B8 237 aaKnown RBP4.35□□□□□ -1.71
LIMA1-206ENST00000550611 NUB1Q9Y5A7 615 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 PTPRCP08575 1304 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 ZNF521Q96K83 1311 aa4.35□□□□□ -1.71
LIMA1-206ENST00000550611 EPOPA6NHQ4 379 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 KRTAP29-1A8MX34 341 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-206ENST00000550611 DNM1LO00429 736 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 ARHGAP6O43182 974 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 LDHCP07864 332 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 ASNSP08243 561 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 ZKSCAN1P17029 563 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-206ENST00000550611 CNGA1P29973 690 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 MSX2P35548 267 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-206ENST00000550611 RGS2P41220 211 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 ADCYAP1R1P41586 468 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 IRX3P78415 501 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-206ENST00000550611 HHEXQ03014 270 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 TUSC3Q13454 348 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 AAK1Q2M2I8 961 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 SHROOM1Q2M3G4 852 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-206ENST00000550611 DENND5AQ6IQ26 1287 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 LBX2Q6XYB7 198 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 ASCL5Q7RTU5 278 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 DZIP1Q86YF9 867 aaKnown RBP4.34□□□□□ -1.71
LIMA1-206ENST00000550611 FOXP4Q8IVH2 680 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-206ENST00000550611 TRPV1Q8NER1 839 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 PIP4K2CQ8TBX8 421 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 SREK1Q8WXA9 508 aaKnown RBP4.34□□□□□ -1.71
LIMA1-206ENST00000550611 SSH1Q8WYL5 1049 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 CFHR4Q92496 578 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 LPAR1Q92633 364 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 PPP1R14AQ96A00 147 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 EDC3Q96F86 508 aaKnown RBP4.34□□□□□ -1.71
LIMA1-206ENST00000550611 DRC1Q96MC2 740 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 TACO1Q9BSH4 297 aaKnown RBP4.34□□□□□ -1.71
LIMA1-206ENST00000550611 TINF2Q9BSI4 451 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 TANGO6Q9C0B7 1094 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 SIL1Q9H173 461 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 DHX36Q9H2U1 1008 aaKnown RBP4.34□□□□□ -1.71
LIMA1-206ENST00000550611 C12orf65Q9H3J6 166 aaKnown RBP4.34□□□□□ -1.71
LIMA1-206ENST00000550611 AS3MTQ9HBK9 375 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 HMG20BQ9P0W2 317 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 PI4KBQ9UBF8 816 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 ABCF2Q9UG63 623 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 DDX20Q9UHI6 824 aaKnown RBP4.34□□□□□ -1.71
LIMA1-206ENST00000550611 PA2G4Q9UQ80 394 aaKnown RBP4.34□□□□□ -1.71
LIMA1-206ENST00000550611 RABGAP1Q9Y3P9 1069 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 MTCH2Q9Y6C9 303 aa4.34□□□□□ -1.71
LIMA1-206ENST00000550611 ANKRD11Q6UB99 2663 aaPredicted RBP4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms