RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 ANKEF1Q9NU02 776 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 NOTCH4Q99466 2003 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 COL4A2P08572 1712 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 I3L4J1 428 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 USO1O60763 962 aaKnown RBP11.57□□□□□ -0.56
VPS29-208ENST00000550267 B3GAT3O94766 335 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 LRG1P02750 347 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 PTPN2P17706 415 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 GDI1P31150 447 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 HSPA4P34932 840 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 GRM5P41594 1212 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 BRCC3P46736 316 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 CXCL12P48061 93 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 RARRES1P49788 294 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 GAS6Q14393 721 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 CD300LGQ6UXG3 332 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 VITQ6UXI7 678 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 PIK3AP1Q6ZUJ8 805 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 RTL10Q7L3V2 364 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.57□□□□□ -0.56
VPS29-208ENST00000550267 MAP4K3Q8IVH8 894 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 NOSTRINQ8IVI9 506 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 PARP9Q8IXQ6 854 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 ITPKCQ96DU7 683 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 PRIMPOLQ96LW4 560 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 CCDC43Q96MW1 224 aaKnown RBP11.57□□□□□ -0.56
VPS29-208ENST00000550267 ZFAND3Q9H8U3 227 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 ZFP14Q9HCL3 533 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 PRMT7Q9NVM4 692 aaPredicted RBP11.57□□□□□ -0.56
VPS29-208ENST00000550267 ANGPTL2Q9UKU9 493 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 USP20Q9Y2K6 914 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 BACE2Q9Y5Z0 518 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 PIAS3Q9Y6X2 628 aa11.57□□□□□ -0.56
VPS29-208ENST00000550267 ARHGEF37A1IGU5 675 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 TMEM189-UBE2V1I3L0A0 370 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 CPLX1O14810 134 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 N4BP3O15049 544 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 CDC45O75419 566 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 LYPLA2O95372 231 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 BAG4O95429 457 aaKnown RBP11.56□□□□□ -0.56
VPS29-208ENST00000550267 CHRNB1P11230 501 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 CCR2P41597 374 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 CLCNKBP51801 687 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 ROR1Q01973 937 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 TOB2Q14106 344 aaPredicted RBP11.56□□□□□ -0.56
VPS29-208ENST00000550267 TMEM132AQ24JP5 1023 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 C4orf48Q5BLP8 95 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 EARS2Q5JPH6 523 aaKnown RBP11.56□□□□□ -0.56
VPS29-208ENST00000550267 GLRA4Q5JXX5 417 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 ANKS3Q6ZW76 656 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 BPHLQ86WA6 291 aaPredicted RBP11.56□□□□□ -0.56
VPS29-208ENST00000550267 FAM177A1Q8N128 213 aaPredicted RBP11.56□□□□□ -0.56
VPS29-208ENST00000550267 PIGOQ8TEQ8 1089 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 ZSWIM3Q96MP5 696 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 ASB16Q96NS5 453 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 HSD17B14Q9BPX1 270 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 FZD8Q9H461 694 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 GOLGA2P5Q9HBQ8 144 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 GJB4Q9NTQ9 266 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 GDAQ9Y2T3 454 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 VWA8A3KMH1 1905 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 NCANO14594 1321 aa11.56□□□□□ -0.56
VPS29-208ENST00000550267 ACACBO00763 2458 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 WDR27A2RRH5 827 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 PRRG1O14668 218 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 DTNBO60941 627 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 SEC24AO95486 1093 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 EDN1P05305 212 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 PSMC3P17980 439 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 LIG1P18858 919 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 CCNE1P24864 410 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 PSMA5P28066 241 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 PMLP29590 882 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 HOXC13P31276 330 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 ELF1P32519 619 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 VIPR2P41587 438 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 ARPP19P56211 112 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 STK3Q13188 491 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 FAM187BQ17R55 369 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 N4BP2L1Q5TBK1 243 aaPredicted RBP11.55□□□□□ -0.56
VPS29-208ENST00000550267 EEF1DP3Q658K8 133 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 CDCA2Q69YH5 1023 aaPredicted RBP11.55□□□□□ -0.56
VPS29-208ENST00000550267 HEATR6Q6AI08 1181 aaKnown RBP11.55□□□□□ -0.56
VPS29-208ENST00000550267 IL31Q6EBC2 164 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 SLC8B1Q6J4K2 584 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 PDZD4Q76G19 769 aaPredicted RBP11.55□□□□□ -0.56
VPS29-208ENST00000550267 ZBTB8OSQ8IWT0 167 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 SLFN12Q8IYM2 578 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 C3orf58Q8NDZ4 430 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 ZNF461Q8TAF7 563 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 SMARCD2Q92925 531 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 NAP1L4Q99733 375 aaKnown RBP11.55□□□□□ -0.56
VPS29-208ENST00000550267 TRPV5Q9NQA5 729 aa11.55□□□□□ -0.56
VPS29-208ENST00000550267 RBM12Q9NTZ6 932 aaKnown RBP11.55□□□□□ -0.56
VPS29-208ENST00000550267 K7ESF4 209 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 ZNF197O14709 1029 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 ZNF263O14978 683 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 MOSPD3O75425 235 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 ABLIM3O94929 683 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 PRKCBP05771 671 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms