RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 PRDM10Q9NQV6 1147 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 NAGPAQ9UK23 515 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 PCDHA13Q9Y5I0 950 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 ARL5CA6NH57 179 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 KIF2AO00139 706 aaPredicted RBP18.99■□□□□ 0.63
CLIP1-215ENST00000541108 THP07101 528 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 KRT5P13647 590 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 LRPAP1P30533 357 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 PNPLA4P41247 253 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 PDE6CP51160 858 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 GUCY2FP51841 1108 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 C9orf57Q5W0N0 161 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 ZNF598Q86UK7 904 aaKnown RBP18.99■□□□□ 0.63
CLIP1-215ENST00000541108 RTN4RL1Q86UN2 441 aaPredicted RBP18.99■□□□□ 0.63
CLIP1-215ENST00000541108 ZNF677Q86XU0 584 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 C18orf25Q96B23 403 aaPredicted RBP18.99■□□□□ 0.63
CLIP1-215ENST00000541108 PAWRQ96IZ0 340 aaKnown RBP18.99■□□□□ 0.63
CLIP1-215ENST00000541108 ZFP42Q96MM3 310 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 RPS6KC1Q96S38 1066 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 GAD1Q99259 594 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 RSAD1Q9HA92 442 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 NXF1Q9UBU9 619 aaKnown RBP18.99■□□□□ 0.63
CLIP1-215ENST00000541108 TUBGCP4Q9UGJ1 667 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 NOCTQ9UK39 431 aaKnown RBP18.99■□□□□ 0.63
CLIP1-215ENST00000541108 PCDHB4Q9Y5E5 795 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 ATP8B3O60423 1300 aa18.99■□□□□ 0.63
CLIP1-215ENST00000541108 MEIS3P2A8K0S8 358 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 TNFAIP3P21580 790 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 MLH1P40692 756 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 MAGEA1P43355 309 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 NAB2Q15742 525 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 ARHGAP29Q52LW3 1261 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 ALKBH5Q6P6C2 394 aaKnown RBP18.98■□□□□ 0.63
CLIP1-215ENST00000541108 TMEM270Q6UE05 265 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 KIAA1328Q86T90 577 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 SLC47A2Q86VL8 602 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 SEPT8Q92599 483 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 CISHQ9NSE2 258 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 NENFQ9UMX5 172 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 DDX3XO00571 662 aaKnown RBP eCLIP18.98■□□□□ 0.63
CLIP1-215ENST00000541108 INPPL1O15357 1258 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 KRT86O43790 486 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 CXCL10P02778 98 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 KIF5AQ12840 1032 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 NECAB2Q7Z6G3 386 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 DBF4BQ8NFT6 615 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 LPPQ93052 612 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 ZNF560Q96MR9 790 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 TSGA10Q9BZW7 698 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 TBX21Q9UL17 535 aa18.98■□□□□ 0.63
CLIP1-215ENST00000541108 KIAA0100Q14667 2235 aaKnown RBP18.97■□□□□ 0.63
CLIP1-215ENST00000541108 PJA2O43164 708 aa18.97■□□□□ 0.63
CLIP1-215ENST00000541108 ZNF132P52740 706 aa18.97■□□□□ 0.63
CLIP1-215ENST00000541108 TNNC1P63316 161 aa18.97■□□□□ 0.63
CLIP1-215ENST00000541108 CDR2Q01850 454 aa18.97■□□□□ 0.63
CLIP1-215ENST00000541108 NOP9Q86U38 636 aaKnown RBP18.97■□□□□ 0.63
CLIP1-215ENST00000541108 GLYCTKQ8IVS8 523 aa18.97■□□□□ 0.63
CLIP1-215ENST00000541108 OLIG1Q8TAK6 271 aa18.97■□□□□ 0.63
CLIP1-215ENST00000541108 DDX1Q92499 740 aaKnown RBP18.97■□□□□ 0.63
CLIP1-215ENST00000541108 C16orf45Q96MC5 204 aaPredicted RBP18.97■□□□□ 0.63
CLIP1-215ENST00000541108 ELAC1Q9H777 363 aaKnown RBP18.97■□□□□ 0.63
CLIP1-215ENST00000541108 WEE2P0C1S8 567 aa18.96■□□□□ 0.63
CLIP1-215ENST00000541108 GZMAP12544 262 aa18.96■□□□□ 0.63
CLIP1-215ENST00000541108 ARHGAP25P42331 645 aa18.96■□□□□ 0.63
CLIP1-215ENST00000541108 SOX4Q06945 474 aaPredicted RBP18.96■□□□□ 0.63
CLIP1-215ENST00000541108 CCDC122Q5T0U0 273 aa18.96■□□□□ 0.63
CLIP1-215ENST00000541108 RBBP8NLQ8NC74 664 aaPredicted RBP18.96■□□□□ 0.63
CLIP1-215ENST00000541108 LNX1Q8TBB1 728 aaPredicted RBP18.96■□□□□ 0.63
CLIP1-215ENST00000541108 LZTFL1Q9NQ48 299 aa18.96■□□□□ 0.63
CLIP1-215ENST00000541108 INTUQ9ULD6 942 aa18.96■□□□□ 0.63
CLIP1-215ENST00000541108 POLIQ9UNA4 740 aa18.96■□□□□ 0.63
CLIP1-215ENST00000541108 ATP11BQ9Y2G3 1177 aa18.96■□□□□ 0.63
CLIP1-215ENST00000541108 TANC1Q9C0D5 1861 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 ENPP3O14638 875 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 CLTBP09497 229 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 RPL9P32969 192 aaKnown RBP18.95■□□□□ 0.62
CLIP1-215ENST00000541108 RPUSD2Q8IZ73 545 aaKnown RBP18.95■□□□□ 0.62
CLIP1-215ENST00000541108 TMEM130Q8N3G9 435 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 SLC20A1Q8WUM9 679 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 LINC01599Q8WXQ3 324 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 WNT8AQ9H1J5 351 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 TMEM39AQ9NV64 488 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 TMEM161AQ9NX61 479 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 MIOSQ9NXC5 875 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 GDAP2Q9NXN4 497 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 MYO1AQ9UBC5 1043 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 SCN1AP35498 2009 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 KPNA7A9QM74 516 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 TNNT1P13805 278 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 CHRNB2P17787 502 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 CD58P19256 250 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 TAF6P49848 677 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 ETF1P62495 437 aaKnown RBP18.95■□□□□ 0.62
CLIP1-215ENST00000541108 INCA1Q0VD86 236 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 GRIK3Q13003 919 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 SV2CQ496J9 727 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 RNF169Q8NCN4 708 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 LACRTQ9GZZ8 138 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 ACP6Q9NPH0 428 aa18.95■□□□□ 0.62
CLIP1-215ENST00000541108 RNF19AQ9NV58 838 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms