RNA–Protein interactions for RNA: ENST00000539047.1

VAMP1-207, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 4

Gene VAMP1, Length 565 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-207ENST00000539047 LINC01599Q8WXQ3 324 aa16.52■□□□□ 0.24
VAMP1-207ENST00000539047 DDX27Q96GQ7 796 aaKnown RBP16.52■□□□□ 0.24
VAMP1-207ENST00000539047 MRPL9Q9BYD2 267 aaKnown RBP16.52■□□□□ 0.24
VAMP1-207ENST00000539047 CYP3A43Q9HB55 503 aa16.52■□□□□ 0.24
VAMP1-207ENST00000539047 AJAP1Q9UKB5 411 aaPredicted RBP16.52■□□□□ 0.24
VAMP1-207ENST00000539047 NUB1Q9Y5A7 615 aa16.52■□□□□ 0.24
VAMP1-207ENST00000539047 PCDHB4Q9Y5E5 795 aa16.52■□□□□ 0.24
VAMP1-207ENST00000539047 ABHD14A-ACY1A0A1B0GW23 586 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 ARHGEF37A1IGU5 675 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 SOWAHDA6NJG2 315 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 ENPP3O14638 875 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 INPPL1O15357 1258 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 ZSCAN12O43309 604 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 EVI5O60447 810 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 CCDC175P0C221 793 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 LRPAP1P30533 357 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 PRKCIP41743 596 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 KRT83P78385 493 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 TUSC3Q13454 348 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 NOMO2Q5JPE7 1267 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 UBE2Q1Q7Z7E8 422 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 TMEM139Q8IV31 216 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 KREMEN1Q96MU8 473 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 MMS19Q96T76 1030 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 XYLT2Q9H1B5 865 aa16.51■□□□□ 0.23
VAMP1-207ENST00000539047 NHEJ1Q9H9Q4 299 aaPredicted RBP16.51■□□□□ 0.23
VAMP1-207ENST00000539047 APOBEC3GQ9HC16 384 aaKnown RBP16.51■□□□□ 0.23
VAMP1-207ENST00000539047 CEP290O15078 2479 aa16.5■□□□□ 0.23
VAMP1-207ENST00000539047 ANO9A1A5B4 782 aa16.5■□□□□ 0.23
VAMP1-207ENST00000539047 MEIS3P2A8K0S8 358 aa16.5■□□□□ 0.23
VAMP1-207ENST00000539047 FOXN3O00409 490 aaPredicted RBP16.5■□□□□ 0.23
VAMP1-207ENST00000539047 POMCP01189 267 aa16.5■□□□□ 0.23
VAMP1-207ENST00000539047 AMHP03971 560 aa16.5■□□□□ 0.23
VAMP1-207ENST00000539047 EIF4A3P38919 411 aaKnown RBP16.5■□□□□ 0.23
VAMP1-207ENST00000539047 PTK2Q05397 1052 aa16.5■□□□□ 0.23
VAMP1-207ENST00000539047 PPIGQ13427 754 aaKnown RBP eCLIP16.5■□□□□ 0.238e-7■■■□□ 14.9
VAMP1-207ENST00000539047 WDR59Q6PJI9 974 aa16.5■□□□□ 0.23
VAMP1-207ENST00000539047 RTN4RL1Q86UN2 441 aaPredicted RBP16.5■□□□□ 0.23
VAMP1-207ENST00000539047 FAM71AQ8IYT1 594 aa16.5■□□□□ 0.23
VAMP1-207ENST00000539047 KAT5Q92993 513 aa16.5■□□□□ 0.23
VAMP1-207ENST00000539047 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.5■□□□□ 0.23
VAMP1-207ENST00000539047 SCN1AP35498 2009 aa16.5■□□□□ 0.23
VAMP1-207ENST00000539047 TRIM43BA6NCK2 446 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 GOLGA6L9A6NEM1 432 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 PODXLO00592 558 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 PIRO00625 290 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 BAIAP3O94812 1187 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 NDUFA10O95299 355 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 CD58P19256 250 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 ASPAP45381 313 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 KIF11P52732 1056 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 TTC3P53804 2025 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 GPNMBQ14956 572 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 FNDC1Q4ZHG4 1894 aaPredicted RBP16.49■□□□□ 0.23
VAMP1-207ENST00000539047 TMEM270Q6UE05 265 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 C7orf61Q8IZ16 206 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 RBBP8NLQ8NC74 664 aaPredicted RBP16.49■□□□□ 0.23
VAMP1-207ENST00000539047 TRIM43Q96BQ3 446 aaPredicted RBP16.49■□□□□ 0.23
VAMP1-207ENST00000539047 CHP1Q99653 195 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 ARID3AQ99856 593 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 BCO2Q9BYV7 579 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 GPR88Q9GZN0 384 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 HAUS4Q9H6D7 363 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 SEPT11Q9NVA2 429 aaKnown RBP16.49■□□□□ 0.23
VAMP1-207ENST00000539047 ARHGAP20Q9P2F6 1191 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 PYCARDQ9ULZ3 195 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 POLIQ9UNA4 740 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 SNX9Q9Y5X1 595 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 EPN1Q9Y6I3 576 aaPredicted RBP16.49■□□□□ 0.23
VAMP1-207ENST00000539047 TET1Q8NFU7 2136 aa16.49■□□□□ 0.23
VAMP1-207ENST00000539047 KPNA7A9QM74 516 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 HUS1O60921 280 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 PNMA6AP0CW24 399 aaPredicted RBP16.48■□□□□ 0.23
VAMP1-207ENST00000539047 FGFR1P11362 822 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 CSF2RAP15509 400 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 TNFAIP3P21580 790 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 SOX4Q06945 474 aaPredicted RBP16.48■□□□□ 0.23
VAMP1-207ENST00000539047 BMS1Q14692 1282 aaKnown RBP16.48■□□□□ 0.23
VAMP1-207ENST00000539047 E4F1Q66K89 784 aaPredicted RBP16.48■□□□□ 0.23
VAMP1-207ENST00000539047 IRF2BP2Q7Z5L9 587 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 KIAA1328Q86T90 577 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 ZNF677Q86XU0 584 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 GPIHBP1Q8IV16 184 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 CXorf38Q8TB03 319 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 ELMO3Q96BJ8 720 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 CXCL16Q9H2A7 254 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 PDCL3Q9H2J4 239 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 GOLGA2P5Q9HBQ8 144 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 IL23AQ9NPF7 189 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 CISHQ9NSE2 258 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 RNF19AQ9NV58 838 aa16.48■□□□□ 0.23
VAMP1-207ENST00000539047 CASTOR2A6NHX0 329 aa16.47■□□□□ 0.23
VAMP1-207ENST00000539047 ESPNB1AK53 854 aa16.47■□□□□ 0.23
VAMP1-207ENST00000539047 EIF3CLB5ME19 914 aaKnown RBP16.47■□□□□ 0.23
VAMP1-207ENST00000539047 CYP26A1O43174 497 aa16.47■□□□□ 0.23
VAMP1-207ENST00000539047 FPGSQ05932 587 aa16.47■□□□□ 0.23
VAMP1-207ENST00000539047 CLLU1OSQ5K130 101 aa16.47■□□□□ 0.23
VAMP1-207ENST00000539047 HGSNATQ68CP4 663 aa16.47■□□□□ 0.23
VAMP1-207ENST00000539047 RAD9BQ6WBX8 426 aa16.47■□□□□ 0.23
VAMP1-207ENST00000539047 LRRC43Q8N309 656 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms