RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CUEDC2Q9H467 287 aa13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 NXF3Q9H4D5 531 aaKnown RBP13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 BRD9Q9H8M2 597 aa13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 ZNF334Q9HCZ1 680 aaPredicted RBP13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 RGL1Q9NZL6 768 aa13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 STK17AQ9UEE5 414 aa13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 DNM3Q9UQ16 869 aa13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 SF3B1O75533 1304 aaKnown RBP eCLIP13.66□□□□□ -0.223e-9■■■■■ 206.8
CLSTN3-208ENST00000538933 MYH11P35749 1972 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 SRRM3A6NNA2 597 aaPredicted RBP13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 TRAK2O60296 914 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 RHOP08100 348 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 AKAP5P24588 427 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 AXLP30530 894 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 HOXA6P31267 233 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 CCDC6Q16204 474 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 AMHR2Q16671 573 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 AASDHQ4L235 1098 aaPredicted RBP13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 FAM78AQ5JUQ0 283 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 PRSS36Q5K4E3 855 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 PLA2G2CQ5R387 149 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 FAM171A1Q5VUB5 890 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 GPT2Q8TD30 523 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 PSPC1Q8WXF1 523 aaKnown RBP13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 CCDC51Q96ER9 411 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 CPB2Q96IY4 423 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 NACC1Q96RE7 527 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 MMTAG2Q9BU76 263 aaKnown RBP13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 ARRDC1-AS1Q9H2J1 176 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 SERTAD1Q9UHV2 236 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 HPSEQ9Y251 543 aa13.66□□□□□ -0.22
CLSTN3-208ENST00000538933 FAM237AA0A1B0GTK4 181 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 ARNTLO00327 626 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 AXIN1O15169 862 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 SLITRK3O94933 977 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 KIF4AO95239 1232 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 IGFBP6P24592 240 aaPredicted RBP13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 OR1D2P34982 312 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 RAP1GAPP47736 663 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 PTENP60484 403 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 AMPD3Q01432 767 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 GRIK3Q13003 919 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 DHX8Q14562 1220 aaKnown RBP13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 PCBP1Q15365 356 aaKnown RBP eCLIP13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 KLHL40Q2TBA0 621 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 CAVIN1Q6NZI2 390 aaKnown RBP13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 NOTUMQ6P988 496 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 SV2BQ7L1I2 683 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 OTUD6AQ7L8S5 288 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 FMR1NBQ8N0W7 255 aaPredicted RBP13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 KCTD17Q8N5Z5 321 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 RNF149Q8NC42 400 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 HASPINQ8TF76 798 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 LARP4BQ92615 738 aaKnown RBP13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 IRF7Q92985 503 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 PNMA5Q96PV4 448 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 HSD17B14Q9BPX1 270 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 TRMT61BQ9BVS5 477 aaKnown RBP13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 APOL6Q9BWW8 343 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 LRRC27Q9C0I9 530 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 NUP62CLQ9H1M0 184 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 MAGEF1Q9HAY2 307 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 KLK14Q9P0G3 267 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 WRAP73Q9P2S5 460 aaPredicted RBP13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 PIAS3Q9Y6X2 628 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 ZMYM2Q9UBW7 1377 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 TRIP11Q15643 1979 aa13.65□□□□□ -0.22
CLSTN3-208ENST00000538933 A0A087X0B3 334 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 E9PMD0 336 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 ASAP2O43150 1006 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 KRT18P05783 430 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 SPATA31C1P0DKV0 1188 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 ARF4P18085 180 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 AFMP43652 599 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 MLLT6P55198 1093 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 RING1Q06587 406 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 TUSC3Q13454 348 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 NAB2Q15742 525 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 TMEM119Q4V9L6 283 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 HYIQ5T013 277 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 HEATR6Q6AI08 1181 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 PSAPL1Q6NUJ1 521 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 VITQ6UXI7 678 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 KRBA2Q6ZNG9 492 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 WDR5BQ86VZ2 330 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 CEP57Q86XR8 500 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 IFNLR1Q8IU57 520 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 C4orf19Q8IY42 314 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 SLC7A3Q8WY07 619 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 RAD54LQ92698 747 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 GATA6Q92908 595 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 TCEAL4Q96EI5 215 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 LOXL4Q96JB6 756 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 ZSWIM3Q96MP5 696 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 TIGD1Q96MW7 591 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 ASB16Q96NS5 453 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 CXCL16Q9H2A7 254 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 TNMDQ9H2S6 317 aa13.64□□□□□ -0.23
CLSTN3-208ENST00000538933 ZFP14Q9HCL3 533 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms