RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 TBC1D17Q9HA65 648 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 ARHGEF3Q9NR81 526 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 TOPORSQ9NS56 1045 aaPredicted RBP11.02□□□□□ -0.65
VPS28-204ENST00000526054 RMND1Q9NWS8 449 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 NUMBLQ9Y6R0 609 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 DOCK6Q96HP0 2047 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 MIA3Q5JRA6 1907 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 DCHS1Q96JQ0 3298 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 ANHXE9PGG2 379 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 ABLIM1O14639 778 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 KIF20AO95235 890 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 HNRNPA1P09651 372 aaKnown RBP eCLIP11.01□□□□□ -0.65
VPS28-204ENST00000526054 HOXA9P31269 272 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 PNOCQ13519 176 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 KCNB1Q14721 858 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 NAB2Q15742 525 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 EPM2AIP1Q7L775 607 aaPredicted RBP11.01□□□□□ -0.65
VPS28-204ENST00000526054 GRASPQ7Z6J2 395 aaPredicted RBP11.01□□□□□ -0.65
VPS28-204ENST00000526054 ST13P5Q8NFI4 369 aaPredicted RBP11.01□□□□□ -0.65
VPS28-204ENST00000526054 LNX1Q8TBB1 728 aaPredicted RBP11.01□□□□□ -0.65
VPS28-204ENST00000526054 SLC7A14Q8TBB6 771 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 ZBTB45Q96K62 511 aaPredicted RBP11.01□□□□□ -0.65
VPS28-204ENST00000526054 ACAP3Q96P50 834 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 CLSTN3Q9BQT9 956 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 MSTO1Q9BUK6 570 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 SLC39A2Q9NP94 309 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 POLIQ9UNA4 740 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 ZFP37Q9Y6Q3 630 aaPredicted RBP11.01□□□□□ -0.65
VPS28-204ENST00000526054 FAM186AA6NE01 2351 aa11.01□□□□□ -0.65
VPS28-204ENST00000526054 A0A0B4J269 797 aa11□□□□□ -0.65
VPS28-204ENST00000526054 TMEM189-UBE2V1I3L0A0 370 aa11□□□□□ -0.65
VPS28-204ENST00000526054 OGTO15294 1046 aa11□□□□□ -0.65
VPS28-204ENST00000526054 CCL16O15467 120 aa11□□□□□ -0.65
VPS28-204ENST00000526054 XYLBO75191 536 aa11□□□□□ -0.65
VPS28-204ENST00000526054 B3GAT3O94766 335 aa11□□□□□ -0.65
VPS28-204ENST00000526054 RHOBTB3O94955 611 aa11□□□□□ -0.65
VPS28-204ENST00000526054 OSTNP61366 133 aa11□□□□□ -0.65
VPS28-204ENST00000526054 NTHL1P78549 312 aa11□□□□□ -0.65
VPS28-204ENST00000526054 BMT2Q1RMZ1 405 aa11□□□□□ -0.65
VPS28-204ENST00000526054 SLC39A4Q6P5W5 647 aa11□□□□□ -0.65
VPS28-204ENST00000526054 CEP120Q8N960 986 aa11□□□□□ -0.65
VPS28-204ENST00000526054 GLIS3Q8NEA6 775 aa11□□□□□ -0.65
VPS28-204ENST00000526054 ZNF507Q8TCN5 953 aa11□□□□□ -0.65
VPS28-204ENST00000526054 SCFD1Q8WVM8 642 aa11□□□□□ -0.65
VPS28-204ENST00000526054 POMGNT1Q8WZA1 660 aa11□□□□□ -0.65
VPS28-204ENST00000526054 SMARCE1Q969G3 411 aa11□□□□□ -0.65
VPS28-204ENST00000526054 UROC1Q96N76 676 aa11□□□□□ -0.65
VPS28-204ENST00000526054 PPP1R10Q96QC0 940 aaKnown RBP11□□□□□ -0.65
VPS28-204ENST00000526054 GTPBP4Q9BZE4 634 aaKnown RBP11□□□□□ -0.65
VPS28-204ENST00000526054 SLC2A4RGQ9NR83 387 aa11□□□□□ -0.65
VPS28-204ENST00000526054 CDH7Q9ULB5 785 aa11□□□□□ -0.65
VPS28-204ENST00000526054 STYXL1Q9Y6J8 313 aa11□□□□□ -0.65
VPS28-204ENST00000526054 ANK1P16157 1881 aa11□□□□□ -0.65
VPS28-204ENST00000526054 ANKRD63C9JTQ0 380 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 KIAA0391O15091 583 aaKnown RBP10.99□□□□□ -0.65
VPS28-204ENST00000526054 ADAM12O43184 909 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 CLTAP09496 248 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 GARTP22102 1010 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 FGFR3P22607 806 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 OR1D2P34982 312 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 CLCNKBP51801 687 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 SNRPFP62306 86 aaKnown RBP10.99□□□□□ -0.65
VPS28-204ENST00000526054 KCNA1Q09470 495 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 STK4Q13043 487 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 PHLDB3Q6NSJ2 640 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 ARMCX5Q6P1M9 558 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 DCLRE1AQ6PJP8 1040 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 MTSS1LQ765P7 747 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 HS2ST1Q7LGA3 356 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 NELFCDQ8IXH7 590 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 KIAA0895Q8NCT3 520 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 FGF13Q92913 245 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 FGF14Q92915 247 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 SNX27Q96L92 541 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 GSDMAQ96QA5 445 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 GOLGA2P5Q9HBQ8 144 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 LMBRD1Q9NUN5 540 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 CGNQ9P2M7 1197 aaKnown RBP10.99□□□□□ -0.65
VPS28-204ENST00000526054 MTRRQ9UBK8 725 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 AGO2Q9UKV8 859 aaKnown RBP10.99□□□□□ -0.65
VPS28-204ENST00000526054 CDY1Q9Y6F8 540 aa10.99□□□□□ -0.65
VPS28-204ENST00000526054 COL4A3Q01955 1670 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 PATJQ8NI35 1801 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 TISP43B9A030 160 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 TRAPPC3O43617 180 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 LDHAP00338 332 aaKnown RBP10.98□□□□□ -0.65
VPS28-204ENST00000526054 DCNP07585 359 aaKnown RBP10.98□□□□□ -0.65
VPS28-204ENST00000526054 POU2F2P09086 479 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 CXCL8P10145 99 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 TKTP29401 623 aaKnown RBP10.98□□□□□ -0.65
VPS28-204ENST00000526054 PPP2R3AQ06190 1150 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 RAB33AQ14088 237 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 UPP1Q16831 310 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 KNOP1Q1ED39 458 aaKnown RBP10.98□□□□□ -0.65
VPS28-204ENST00000526054 PABPC1LQ4VXU2 614 aaKnown RBP10.98□□□□□ -0.65
VPS28-204ENST00000526054 PARM1Q6UWI2 310 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 ANKS3Q6ZW76 656 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 ADSSL1Q8N142 457 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 C3orf58Q8NDZ4 430 aa10.98□□□□□ -0.65
VPS28-204ENST00000526054 PJA1Q8NG27 643 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms