RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	DCAF4L1	Q3SXM0	396 aa		11.53	□□□□□ -0.56
CLDND1-231	ENST00000515620	ARHGAP29	Q52LW3	1261 aa		11.53	□□□□□ -0.56
CLDND1-231	ENST00000515620	ZNF280D	Q6N043	979 aa		11.53	□□□□□ -0.56
CLDND1-231	ENST00000515620	PIK3AP1	Q6ZUJ8	805 aa		11.53	□□□□□ -0.56
CLDND1-231	ENST00000515620	ARID3B	Q8IVW6	561 aa	Predicted RBP	11.53	□□□□□ -0.56
CLDND1-231	ENST00000515620	BSND	Q8WZ55	320 aa		11.53	□□□□□ -0.56
CLDND1-231	ENST00000515620	LRRC3B	Q96PB8	259 aa		11.53	□□□□□ -0.56
CLDND1-231	ENST00000515620	HHIP	Q96QV1	700 aa		11.53	□□□□□ -0.56
CLDND1-231	ENST00000515620	C2orf40	Q9H1Z8	148 aa		11.53	□□□□□ -0.56
CLDND1-231	ENST00000515620	POLR3B	Q9NW08	1133 aa	Predicted RBP	11.53	□□□□□ -0.56
CLDND1-231	ENST00000515620	AFF4	Q9UHB7	1163 aa	Known RBP	11.53	□□□□□ -0.56
CLDND1-231	ENST00000515620	GCN1	Q92616	2671 aa	Known RBP	11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	SMIM28	A0A1B0GU29	152 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	ACKR2	O00590	384 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	CPLX1	O14810	134 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	DCLK1	O15075	740 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	BAG4	O95429	457 aa	Known RBP	11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	PRR29	P0C7W0	189 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	CEACAM1	P13688	526 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	RPS6KB1	P23443	525 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	RNF19B	Q6ZMZ0	732 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	TMC8	Q8IU68	726 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	SLFN12	Q8IYM2	578 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	MCPH1	Q8NEM0	835 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	TMEM209	Q96SK2	561 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	NAP1L4	Q99733	375 aa	Known RBP	11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	HSD17B14	Q9BPX1	270 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	AGXT2	Q9BYV1	514 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	CCDC113	Q9H0I3	377 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	DUSP15	Q9H1R2	295 aa	Predicted RBP	11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	TMEM9B	Q9NQ34	198 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	NUB1	Q9Y5A7	615 aa		11.52	□□□□□ -0.57
CLDND1-231	ENST00000515620	DSP	P15924	2871 aa	Known RBP	11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	BCLAF3	A2AJT9	711 aa	Known RBP	11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	TAF4	O00268	1085 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	HYAL3	O43820	417 aa	Predicted RBP	11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	ATG13	O75143	517 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	RHOBTB1	O94844	696 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	PRAMEF12	O95522	483 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	ATP2B1	P20020	1258 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	CSRP1	P21291	193 aa	Known RBP	11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	MRPL58	Q14197	206 aa	Known RBP	11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	ITPRIPL2	Q3MIP1	535 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	ATF7IP2	Q5U623	682 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	FSTL4	Q6MZW2	842 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	FBXL16	Q8N461	479 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	DEPTOR	Q8TB45	409 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	PGLYRP2	Q96PD5	576 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	MKNK1	Q9BUB5	465 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	KIFC3	Q9BVG8	833 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	LRRC3	Q9BY71	257 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	MAFF	Q9ULX9	164 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	WDFY3	Q8IZQ1	3526 aa		11.51	□□□□□ -0.57
CLDND1-231	ENST00000515620	ITPR1	Q14643	2758 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	EML5	Q05BV3	1969 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	FAM205C	A6NFA0	338 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	RNF40	O75150	1001 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	GBP1	P32455	592 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	MCM4	P33991	863 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	YARS	P54577	528 aa	Known RBP	11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	OSTN	P61366	133 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	PLCB2	Q00722	1185 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	GRSF1	Q12849	480 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	PLD1	Q13393	1074 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	KARS	Q15046	597 aa	Known RBP	11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	UAP1L1	Q3KQV9	507 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	EARS2	Q5JPH6	523 aa	Known RBP	11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	GPR158	Q5T848	1215 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	FAM177A1	Q8N128	213 aa	Predicted RBP	11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	CAMKK1	Q8N5S9	505 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	CEP120	Q8N960	986 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	DEFB124	Q8NES8	71 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	OXER1	Q8TDS5	423 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	KIF12	Q96FN5	646 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	SUSD3	Q96L08	255 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	CCDC94	Q9BW85	323 aa	Predicted RBP	11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	DNAJC25	Q9H1X3	360 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	ATXN3L	Q9H3M9	355 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	TOPORS	Q9NS56	1045 aa	Predicted RBP	11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	SLC38A7	Q9NVC3	462 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	KLK13	Q9UKR3	277 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	PCDHA12	Q9UN75	941 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	SNX14	Q9Y5W7	946 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	LAMA1	P25391	3075 aa		11.5	□□□□□ -0.57
CLDND1-231	ENST00000515620	KHNYN	O15037	678 aa	Known RBP	11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	VNN2	O95498	520 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	OR4Q2	P0C623	313 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	NAMPT	P43490	491 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	MCM2	P49736	904 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	EPHB3	P54753	998 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	EVC	P57679	992 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	CALCRL	Q16602	461 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	ARHGAP15	Q53QZ3	475 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	TMEM196	Q5HYL7	178 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	NT5DC1	Q5TFE4	455 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	GAREM2	Q75VX8	874 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	APPL2	Q8NEU8	664 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	BPIFB1	Q8TDL5	484 aa		11.49	□□□□□ -0.57
CLDND1-231	ENST00000515620	DDX12P	Q92771	950 aa		11.49	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms