RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 BACE2Q9Y5Z0 518 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.38■□□□□ 0.05
NUP54-216ENST00000514901 KRT19P08727 400 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 TYMPP19971 482 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 TKTP29401 623 aaKnown RBP15.38■□□□□ 0.05
NUP54-216ENST00000514901 POLR2BP30876 1174 aaKnown RBP15.38■□□□□ 0.05
NUP54-216ENST00000514901 NDUFV1P49821 464 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 PMS1P54277 932 aaKnown RBP15.38■□□□□ 0.05
NUP54-216ENST00000514901 NLRP12P59046 1061 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 PSMD5Q16401 504 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 LMBRD2Q68DH5 695 aaPredicted RBP15.38■□□□□ 0.05
NUP54-216ENST00000514901 TTI2Q6NXR4 508 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 FILIP1Q7Z7B0 1213 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 CXorf38Q8TB03 319 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 SYAP1Q96A49 352 aaPredicted RBP15.38■□□□□ 0.05
NUP54-216ENST00000514901 B3GALT6Q96L58 329 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 SENP8Q96LD8 212 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 METTL14Q9HCE5 456 aaKnown RBP15.38■□□□□ 0.05
NUP54-216ENST00000514901 DPP7Q9UHL4 492 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 SIX4Q9UIU6 781 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 RWDD2AQ9UIY3 292 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 CTNND2Q9UQB3 1225 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 SCN1AP35498 2009 aa15.38■□□□□ 0.05
NUP54-216ENST00000514901 ATG2AQ2TAZ0 1938 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 EYSQ5T1H1 3165 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 TRIM49BA6NDI0 452 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 LRRIQ3A6PVS8 624 aaPredicted RBP15.37■□□□□ 0.05
NUP54-216ENST00000514901 KPNA7A9QM74 516 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 I3L4J1 428 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 PPEF2O14830 753 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 TEX28O15482 410 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 STX10O60499 249 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 PHACTR2O75167 634 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 OAZ2O95190 189 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 GNA14O95837 355 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 ODC1P11926 461 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 GTF2H1P32780 548 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 BFSP1Q12934 665 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 TRPC3Q13507 836 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 MRPL58Q14197 206 aaKnown RBP15.37■□□□□ 0.05
NUP54-216ENST00000514901 VARS2Q5ST30 1063 aaKnown RBP15.37■□□□□ 0.05
NUP54-216ENST00000514901 ELMSAN1Q6PJG2 1045 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 TMEM130Q8N3G9 435 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 PLEKHO2Q8TD55 490 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 ZNF516Q92618 1163 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 CASP10Q92851 521 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 BORCS6Q96GS4 357 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 GZF1Q9H116 711 aaPredicted RBP15.37■□□□□ 0.05
NUP54-216ENST00000514901 UBE2ZQ9H832 354 aaPredicted RBP15.37■□□□□ 0.05
NUP54-216ENST00000514901 CLDND1Q9NY35 253 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 MTRRQ9UBK8 725 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 PTPRJQ12913 1337 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 REV3LO60673 3130 aa15.37■□□□□ 0.05
NUP54-216ENST00000514901 CYB561D2O14569 222 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 SPTLC1O15269 473 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 C4BPAP04003 597 aaKnown RBP15.36■□□□□ 0.05
NUP54-216ENST00000514901 CYP11A1P05108 521 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 HOXB8P17481 243 aaPredicted RBP15.36■□□□□ 0.05
NUP54-216ENST00000514901 ERCC5P28715 1186 aaPredicted RBP15.36■□□□□ 0.05
NUP54-216ENST00000514901 ATICP31939 592 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 GTF2F1P35269 517 aaKnown RBP eCLIP15.36■□□□□ 0.05
NUP54-216ENST00000514901 YWHAHQ04917 246 aaPredicted RBP15.36■□□□□ 0.05
NUP54-216ENST00000514901 KCNC3Q14003 757 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 AAK1Q2M2I8 961 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 SASS6Q6UVJ0 657 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 PRSS55Q6UWB4 352 aaPredicted RBP15.36■□□□□ 0.05
NUP54-216ENST00000514901 EP400NLQ6ZTU2 488 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 FRMD5Q7Z6J6 570 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 METTL23Q86XA0 190 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 SLC22A17Q8WUG5 538 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 HDAC7Q8WUI4 952 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 HPDLQ96IR7 371 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 DUSP9Q99956 384 aaKnown RBP15.36■□□□□ 0.05
NUP54-216ENST00000514901 CLSTN3Q9BQT9 956 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 GDAP2Q9NXN4 497 aa15.36■□□□□ 0.05
NUP54-216ENST00000514901 ARMCX3Q9UH62 379 aaPredicted RBP15.36■□□□□ 0.05
NUP54-216ENST00000514901 VWA8A3KMH1 1905 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 HUS1O60921 280 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 STAU1O95793 577 aaKnown RBP15.35■□□□□ 0.05
NUP54-216ENST00000514901 GLUD1P00367 558 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 FAM163BP0C2L3 166 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 CLCN4P51793 760 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 STX17P56962 302 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 DLG4P78352 724 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 BIRC3Q13489 604 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 RAB33AQ14088 237 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 ZACNQ401N2 412 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 OVOS1Q6IE37 1185 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 ZNF280DQ6N043 979 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 SV2AQ7L0J3 742 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 DPH6Q7L8W6 267 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 TMEM86AQ8N2M4 240 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 SPATA18Q8TC71 538 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 ATXN2LQ8WWM7 1075 aaKnown RBP15.35■□□□□ 0.05
NUP54-216ENST00000514901 EEF2KMTQ96G04 330 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 DZANK1Q9NVP4 752 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 THEGQ9P2T0 379 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 HCFC2Q9Y5Z7 792 aa15.35■□□□□ 0.05
NUP54-216ENST00000514901 OR6C75A6NL08 312 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 TBC1D4O60343 1298 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms