RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 RTN2O75298 545 aa17.12■□□□□ 0.33
NUP54-214ENST00000514307 THP07101 528 aa17.12■□□□□ 0.33
NUP54-214ENST00000514307 PNMA6AP0CW24 399 aaPredicted RBP17.12■□□□□ 0.33
NUP54-214ENST00000514307 COL6A1P12109 1028 aa17.12■□□□□ 0.33
NUP54-214ENST00000514307 TMEM270Q6UE05 265 aa17.12■□□□□ 0.33
NUP54-214ENST00000514307 TRIM72Q6ZMU5 477 aa17.12■□□□□ 0.33
NUP54-214ENST00000514307 SLC24A5Q71RS6 500 aa17.12■□□□□ 0.33
NUP54-214ENST00000514307 GPIHBP1Q8IV16 184 aa17.12■□□□□ 0.33
NUP54-214ENST00000514307 GLYCTKQ8IVS8 523 aa17.12■□□□□ 0.33
NUP54-214ENST00000514307 RPUSD2Q8IZ73 545 aaKnown RBP17.12■□□□□ 0.33
NUP54-214ENST00000514307 FAM84AQ96KN4 292 aa17.12■□□□□ 0.33
NUP54-214ENST00000514307 CISHQ9NSE2 258 aa17.12■□□□□ 0.33
NUP54-214ENST00000514307 ATP8B3O60423 1300 aa17.12■□□□□ 0.33
NUP54-214ENST00000514307 BTNL10A8MVZ5 291 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 MED7O43513 233 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 TACC1O75410 805 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 RPL9P32969 192 aaKnown RBP17.11■□□□□ 0.33
NUP54-214ENST00000514307 ARHGAP25P42331 645 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 GJA8P48165 433 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 NAP1L1P55209 391 aaKnown RBP17.11■□□□□ 0.33
NUP54-214ENST00000514307 FAM189BP81408 668 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 TUBB2AQ13885 445 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 ZNF569Q5MCW4 686 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 C9orf57Q5W0N0 161 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 SYT10Q6XYQ8 523 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 SLC47A2Q86VL8 602 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 RBBP8NLQ8NC74 664 aaPredicted RBP17.11■□□□□ 0.33
NUP54-214ENST00000514307 CXorf38Q8TB03 319 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 UBE2Q2Q8WVN8 375 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 SEPT8Q92599 483 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 APBB2Q92870 758 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 SECISBP2LQ93073 1101 aaKnown RBP17.11■□□□□ 0.33
NUP54-214ENST00000514307 ZNF560Q96MR9 790 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 ZMAT2Q96NC0 199 aaKnown RBP17.11■□□□□ 0.33
NUP54-214ENST00000514307 MMS19Q96T76 1030 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 SYT11Q9BT88 431 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 TUBB2BQ9BVA1 445 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 BCO2Q9BYV7 579 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 MCOLN1Q9GZU1 580 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 DNAI1Q9UI46 699 aa17.11■□□□□ 0.33
NUP54-214ENST00000514307 NOCTQ9UK39 431 aaKnown RBP17.11■□□□□ 0.33
NUP54-214ENST00000514307 ANO9A1A5B4 782 aa17.1■□□□□ 0.33
NUP54-214ENST00000514307 PIRO00625 290 aa17.1■□□□□ 0.33
NUP54-214ENST00000514307 PAEPP09466 180 aa17.1■□□□□ 0.33
NUP54-214ENST00000514307 WEE2P0C1S8 567 aa17.1■□□□□ 0.33
NUP54-214ENST00000514307 NOP9Q86U38 636 aaKnown RBP17.1■□□□□ 0.33
NUP54-214ENST00000514307 EPS8L1Q8TE68 723 aa17.1■□□□□ 0.33
NUP54-214ENST00000514307 DDX27Q96GQ7 796 aaKnown RBP17.1■□□□□ 0.33
NUP54-214ENST00000514307 NOX5Q96PH1 765 aa17.1■□□□□ 0.33
NUP54-214ENST00000514307 ANKRD62A6NC57 917 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 ARL5CA6NH57 179 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 PQBP1O60828 265 aaKnown RBP17.09■□□□□ 0.33
NUP54-214ENST00000514307 FTLP02792 175 aaPredicted RBP17.09■□□□□ 0.33
NUP54-214ENST00000514307 CD58P19256 250 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 LRPAP1P30533 357 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 ASPAP45381 313 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 SV2CQ496J9 727 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 TRAF7Q6Q0C0 670 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 DPH6Q7L8W6 267 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 ECHDC2Q86YB7 292 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 UBR7Q8N806 425 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 TRIM58Q8NG06 486 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 CTNNBL1Q8WYA6 563 aaPredicted RBP17.09■□□□□ 0.33
NUP54-214ENST00000514307 ABHD8Q96I13 439 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 ALS2CR12Q96Q35 445 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 ARID3AQ99856 593 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 LACRTQ9GZZ8 138 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 ISCUQ9H1K1 167 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 RSAD1Q9HA92 442 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 KANSL3Q9P2N6 904 aa17.09■□□□□ 0.33
NUP54-214ENST00000514307 PUF60Q9UHX1 559 aaKnown RBP17.09■□□□□ 0.33
NUP54-214ENST00000514307 A0A0A6YYK5 440 aaPredicted RBP17.08■□□□□ 0.32
NUP54-214ENST00000514307 CTAGE9A4FU28 777 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 THAP12O43422 761 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 TMEM253P0C7T8 217 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 CHRNB2P17787 502 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 GNA15P30679 374 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 TAF6P49848 677 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 ATN1P54259 1190 aaPredicted RBP17.08■□□□□ 0.32
NUP54-214ENST00000514307 GALCP54803 685 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 TLE2Q04725 743 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 GLRA4Q5JXX5 417 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 TAF3Q5VWG9 929 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 ACAD10Q6JQN1 1059 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 AGMOQ6ZNB7 445 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 RNF169Q8NCN4 708 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 LNX1Q8TBB1 728 aaPredicted RBP17.08■□□□□ 0.32
NUP54-214ENST00000514307 SLC20A1Q8WUM9 679 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 DDX1Q92499 740 aaKnown RBP17.08■□□□□ 0.32
NUP54-214ENST00000514307 C18orf25Q96B23 403 aaPredicted RBP17.08■□□□□ 0.32
NUP54-214ENST00000514307 ELMO3Q96BJ8 720 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 TRIM11Q96F44 468 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 UROC1Q96N76 676 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 PPP1R10Q96QC0 940 aaKnown RBP17.08■□□□□ 0.32
NUP54-214ENST00000514307 GAD1Q99259 594 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 GDAP2Q9NXN4 497 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 BARX2Q9UMQ3 279 aaPredicted RBP17.08■□□□□ 0.32
NUP54-214ENST00000514307 NENFQ9UMX5 172 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 POLIQ9UNA4 740 aa17.08■□□□□ 0.32
NUP54-214ENST00000514307 UMODL1Q5DID0 1318 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms