RNA–Protein interactions for RNA: ENST00000511081.5

CLDND1-223, Transcript of claudin domain containing 1, human

TSL 2 BASIC

Gene CLDND1, Length 642 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-223	ENST00000511081	PCDHA7	Q9UN72	937 aa		13.17	□□□□□ -0.3
CLDND1-223	ENST00000511081	DUSP12	Q9UNI6	340 aa		13.17	□□□□□ -0.3
CLDND1-223	ENST00000511081	EXOC7	Q9UPT5	735 aa		13.17	□□□□□ -0.3
CLDND1-223	ENST00000511081	WDR87	Q6ZQQ6	2873 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	PPEF2	O14830	753 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	SPTLC1	O15269	473 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	CCL16	O15467	120 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	SEC24A	O95486	1093 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	LDHA	P00338	332 aa	Known RBP	13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	HSP90AA1	P07900	732 aa	Known RBP	13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	IDE	P14735	1019 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	AVPR2	P30518	371 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	GBP2	P32456	591 aa	Predicted RBP	13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	GUCY2F	P51841	1108 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	NUBP1	P53384	320 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	NTHL1	P78549	312 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	AMPD3	Q01432	767 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	EHHADH	Q08426	723 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	CTXN3	Q4LDR2	81 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	IER5L	Q5T953	404 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	C9orf57	Q5W0N0	161 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	ZNF280D	Q6N043	979 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	CCDC65	Q8IXS2	484 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	POMGNT1	Q8WZA1	660 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	FAM122A	Q96E09	287 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	BORCS6	Q96GS4	357 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	C7orf25	Q9BPX7	421 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	FGFBP2	Q9BYJ0	223 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	TBC1D7	Q9P0N9	293 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	AFF4	Q9UHB7	1163 aa	Known RBP	13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	CFAP45	Q9UL16	551 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	CDH7	Q9ULB5	785 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	ZDHHC9	Q9Y397	364 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	SCN1A	P35498	2009 aa		13.16	□□□□□ -0.3
CLDND1-223	ENST00000511081	IL18RAP	O95256	599 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	GCNT3	O95395	438 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	PDGFB	P01127	241 aa	Predicted RBP	13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	CYP11A1	P05108	521 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	NFIC	P08651	508 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	PTPN2	P17706	415 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	ELF1	P32519	619 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	HOXD13	P35453	343 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	YWHAH	Q04917	246 aa	Predicted RBP	13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	GPR17	Q13304	367 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	HTR4	Q13639	388 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	TMEM132D	Q14C87	1099 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	RESP18	Q5W5W9	173 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	EPM2AIP1	Q7L775	607 aa	Predicted RBP	13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	SUGP1	Q8IWZ8	645 aa	Known RBP	13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	ZSWIM2	Q8NEG5	633 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	ZNF507	Q8TCN5	953 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	RSAD2	Q8WXG1	361 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	FGF13	Q92913	245 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	FAM212A	Q96EL1	285 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	SENP8	Q96LD8	212 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	PRRX2	Q99811	253 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	TMEM206	Q9H813	350 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	MAGEF1	Q9HAY2	307 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	HCFC1R1	Q9NWW0	138 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	WNT16	Q9UBV4	365 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	DMD	P11532	3685 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	USP34	Q70CQ2	3546 aa		13.15	□□□□□ -0.3
CLDND1-223	ENST00000511081	KMT2E	Q8IZD2	1858 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	OR6C75	A6NL08	312 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	KIAA0391	O15091	583 aa	Known RBP	13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	POLR2D	O15514	142 aa	Known RBP	13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	MICAL2	O94851	1124 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	PRPF6	O94906	941 aa	Known RBP	13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	VNN2	O95498	520 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	NPR3	P17342	541 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	CLCN5	P51795	746 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	VCP	P55072	806 aa	Known RBP	13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	WNT7B	P56706	349 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	DNM1	Q05193	864 aa	Known RBP	13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	MYBPC2	Q14324	1141 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	RNF19B	Q6ZMZ0	732 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	BRSK2	Q8IWQ3	736 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	EFCAB13	Q8IY85	973 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	CXorf38	Q8TB03	319 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	ITFG1	Q8TB96	612 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	DPP3	Q9NY33	737 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	TIMM13	Q9Y5L4	95 aa	Predicted RBP	13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	VPS13A	Q96RL7	3174 aa		13.14	□□□□□ -0.31
CLDND1-223	ENST00000511081	PRRG1	O14668	218 aa		13.13	□□□□□ -0.31
CLDND1-223	ENST00000511081	EIF3D	O15371	548 aa	Known RBP eCLIP	13.13	□□□□□ -0.31
CLDND1-223	ENST00000511081	NARS	O43776	548 aa	Known RBP	13.13	□□□□□ -0.31
CLDND1-223	ENST00000511081	EXTL3	O43909	919 aa		13.13	□□□□□ -0.31
CLDND1-223	ENST00000511081	RHO	P08100	348 aa		13.13	□□□□□ -0.31
CLDND1-223	ENST00000511081	SRF	P11831	508 aa		13.13	□□□□□ -0.31
CLDND1-223	ENST00000511081	EPHA5	P54756	1037 aa		13.13	□□□□□ -0.31
CLDND1-223	ENST00000511081	ARPP19	P56211	112 aa		13.13	□□□□□ -0.31
CLDND1-223	ENST00000511081	PABPC1L	Q4VXU2	614 aa	Known RBP	13.13	□□□□□ -0.31
CLDND1-223	ENST00000511081	PRSS36	Q5K4E3	855 aa		13.13	□□□□□ -0.31
CLDND1-223	ENST00000511081	DSTYK	Q6XUX3	929 aa		13.13	□□□□□ -0.31
CLDND1-223	ENST00000511081	GET4	Q7L5D6	327 aa	Predicted RBP	13.13	□□□□□ -0.31
CLDND1-223	ENST00000511081	GLIS3	Q8NEA6	775 aa		13.13	□□□□□ -0.31
CLDND1-223	ENST00000511081	PRSS33	Q8NF86	280 aa		13.13	□□□□□ -0.31
CLDND1-223	ENST00000511081	FGF14	Q92915	247 aa		13.13	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms