RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 C1orf127Q8N9H9 656 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 RBBP8NLQ8NC74 664 aaPredicted RBP9.03□□□□□ -0.96
SF3A1-210ENST00000498259 TMEM35BQ8NCS4 154 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 MNS1Q8NEH6 495 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 SLC30A5Q8TAD4 765 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 TMEM40Q8WWA1 233 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 UROC1Q96N76 676 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 MMS19Q96T76 1030 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 APOL6Q9BWW8 343 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 EIF2AQ9BY44 585 aaKnown RBP9.03□□□□□ -0.96
SF3A1-210ENST00000498259 UNC93B1Q9H1C4 597 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 ISCUQ9H1K1 167 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 NXF3Q9H4D5 531 aaKnown RBP9.03□□□□□ -0.96
SF3A1-210ENST00000498259 MRPL47Q9HD33 250 aaKnown RBP9.03□□□□□ -0.96
SF3A1-210ENST00000498259 ERVK-5Q9HDB9 667 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 CISHQ9NSE2 258 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 TRMT13Q9NUP7 481 aaKnown RBP9.03□□□□□ -0.96
SF3A1-210ENST00000498259 RNF14Q9UBS8 474 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 NXF1Q9UBU9 619 aaKnown RBP9.03□□□□□ -0.96
SF3A1-210ENST00000498259 PUF60Q9UHX1 559 aaKnown RBP9.03□□□□□ -0.96
SF3A1-210ENST00000498259 REXO2Q9Y3B8 237 aaKnown RBP9.03□□□□□ -0.96
SF3A1-210ENST00000498259 NUB1Q9Y5A7 615 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 PTPRJQ12913 1337 aa9.03□□□□□ -0.96
SF3A1-210ENST00000498259 SMIM28A0A1B0GU29 152 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 DDX3XO00571 662 aaKnown RBP eCLIP9.02□□□□□ -0.97
SF3A1-210ENST00000498259 HOXA2O43364 376 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 THAP12O43422 761 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 HUS1O60921 280 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 SGPL1O95470 568 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 FTLP02792 175 aaPredicted RBP9.02□□□□□ -0.97
SF3A1-210ENST00000498259 ATXN8OSP0DMR3 200 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 GHRP10912 638 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 DESP17661 470 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 TCP1P17987 556 aaKnown RBP9.02□□□□□ -0.97
SF3A1-210ENST00000498259 ARHGAP25P42331 645 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 TAF6P49848 677 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 CDK7P50613 346 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 SLC8A3P57103 927 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 C1orf53Q5VUE5 145 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 ACAD10Q6JQN1 1059 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 SLC24A5Q71RS6 500 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 LRRC8DQ7L1W4 858 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 MRPL10Q7Z7H8 261 aaKnown RBP9.02□□□□□ -0.97
SF3A1-210ENST00000498259 SLC47A2Q86VL8 602 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 UNC93AQ86WB7 457 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 TMEM192Q8IY95 271 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 CEP112Q8N8E3 955 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 URGCPQ8TCY9 931 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 RFFLQ8WZ73 363 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 SEPT8Q92599 483 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 RPGRIP1Q96KN7 1286 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 TOX2Q96NM4 488 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 PLVAPQ9BX97 442 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 BCO2Q9BYV7 579 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 XYLT2Q9H1B5 865 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 UVRAGQ9P2Y5 699 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 NOCTQ9UK39 431 aaKnown RBP9.02□□□□□ -0.97
SF3A1-210ENST00000498259 STRIP2Q9ULQ0 834 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 BARX2Q9UMQ3 279 aaPredicted RBP9.02□□□□□ -0.97
SF3A1-210ENST00000498259 UMODL1Q5DID0 1318 aa9.02□□□□□ -0.97
SF3A1-210ENST00000498259 CARNS1A5YM72 827 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 ZNF263O14978 683 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 CALB1P05937 261 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 VDRP11473 427 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 CD58P19256 250 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 ACO1P21399 889 aaKnown RBP9.01□□□□□ -0.97
SF3A1-210ENST00000498259 AKAP5P24588 427 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 LRPAP1P30533 357 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 CD52P31358 61 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 CTCFP49711 727 aaPredicted RBP9.01□□□□□ -0.97
SF3A1-210ENST00000498259 GALCP54803 685 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 HADHBP55084 474 aaKnown RBP9.01□□□□□ -0.97
SF3A1-210ENST00000498259 WNT7BP56706 349 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 TAP1Q03518 808 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 CKAP4Q07065 602 aaKnown RBP9.01□□□□□ -0.97
SF3A1-210ENST00000498259 LPIN1Q14693 890 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 TCEAL1Q15170 157 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 WHAMMP3Q1A5X7 153 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 TRIM71Q2Q1W2 868 aaKnown RBP9.01□□□□□ -0.97
SF3A1-210ENST00000498259 UBXN11Q5T124 520 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 ZNF618Q5T7W0 954 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 C9orf57Q5W0N0 161 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 SPOPLQ6IQ16 392 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 CCDC70Q6NSX1 233 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 GLB1LQ6UWU2 654 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 ANKRD33Q7Z3H0 272 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 NOP9Q86U38 636 aaKnown RBP9.01□□□□□ -0.97
SF3A1-210ENST00000498259 ABI1Q8IZP0 508 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 TMEM86AQ8N2M4 240 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 SMG8Q8ND04 991 aaKnown RBP9.01□□□□□ -0.97
SF3A1-210ENST00000498259 APPL2Q8NEU8 664 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 SPATA18Q8TC71 538 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 ZNF606Q8WXB4 792 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 TMEM176AQ96HP8 235 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 TNIP3Q96KP6 325 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 ADAM2Q99965 735 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 SYT11Q9BT88 431 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 SELENOOQ9BVL4 669 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 TMEM106CQ9BVX2 250 aa9.01□□□□□ -0.97
SF3A1-210ENST00000498259 NT5C1AQ9BXI3 368 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms