RNA–Protein interactions for RNA: ENST00000493945.5

ACTB-213, Transcript of actin beta, humanhuman

TSL 5

Gene ACTB, Length 1,236 nt, Biotype retained intron, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-213ENST00000493945 NUP58Q9BVL2 599 aa16.02■□□□□ 0.16
ACTB-213ENST00000493945 OXCT2Q9BYC2 517 aaPredicted RBP16.02■□□□□ 0.16
ACTB-213ENST00000493945 NIF3L1Q9GZT8 377 aa16.02■□□□□ 0.16
ACTB-213ENST00000493945 INTS2Q9H0H0 1204 aaKnown RBP16.02■□□□□ 0.16
ACTB-213ENST00000493945 RTN4Q9NQC3 1192 aaKnown RBP16.02■□□□□ 0.16
ACTB-213ENST00000493945 IFNKQ9P0W0 207 aa16.02■□□□□ 0.16
ACTB-213ENST00000493945 PCDH10Q9P2E7 1040 aa16.02■□□□□ 0.16
ACTB-213ENST00000493945 LINC01553A4QN01 128 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 SYN3O14994 580 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 KIF4AO95239 1232 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 FAM163BP0C2L3 166 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 GUCY2FP51841 1108 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 RABGGTBP53611 331 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 MFAP3P55082 362 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 LILRA4P59901 499 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 MYL6P60660 151 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 KIAA1841Q6NSI8 718 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 TRIM65Q6PJ69 517 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.01■□□□□ 0.15
ACTB-213ENST00000493945 SLC39A11Q8N1S5 342 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 TOP6BLQ8N6T0 577 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 EHBP1Q8NDI1 1231 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 JAKMIP2Q96AA8 810 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 TIFAQ96CG3 184 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 IGSF21Q96ID5 467 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 MMS19Q96T76 1030 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 PBX4Q9BYU1 374 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 CYP3A43Q9HB55 503 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 GDAP2Q9NXN4 497 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 DNAJB4Q9UDY4 337 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 SIX4Q9UIU6 781 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.01■□□□□ 0.158e-23■□□□□ 8.4
ACTB-213ENST00000493945 SNX9Q9Y5X1 595 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 SCN1AP35498 2009 aa16.01■□□□□ 0.15
ACTB-213ENST00000493945 URODP06132 367 aa16■□□□□ 0.15
ACTB-213ENST00000493945 DNAJB2P25686 324 aa16■□□□□ 0.15
ACTB-213ENST00000493945 BMPR1AP36894 532 aa16■□□□□ 0.15
ACTB-213ENST00000493945 MRE11P49959 708 aa16■□□□□ 0.15
ACTB-213ENST00000493945 GCNT1Q02742 428 aa16■□□□□ 0.15
ACTB-213ENST00000493945 GSE1Q14687 1217 aa16■□□□□ 0.15
ACTB-213ENST00000493945 FUT10Q6P4F1 479 aa16■□□□□ 0.15
ACTB-213ENST00000493945 PPM1KQ8N3J5 372 aa16■□□□□ 0.15
ACTB-213ENST00000493945 FBXO22Q8NEZ5 403 aa16■□□□□ 0.15
ACTB-213ENST00000493945 SUSD3Q96L08 255 aa16■□□□□ 0.15
ACTB-213ENST00000493945 LSM14BQ9BX40 385 aaKnown RBP16■□□□□ 0.15
ACTB-213ENST00000493945 PRO3102Q9H379 93 aa16■□□□□ 0.15
ACTB-213ENST00000493945 PLCB1Q9NQ66 1216 aa16■□□□□ 0.15
ACTB-213ENST00000493945 NXF1Q9UBU9 619 aaKnown RBP16■□□□□ 0.15
ACTB-213ENST00000493945 APEX2Q9UBZ4 518 aa16■□□□□ 0.15
ACTB-213ENST00000493945 PCDHB8Q9UN66 801 aa16■□□□□ 0.15
ACTB-213ENST00000493945 LZTS1Q9Y250 596 aa16■□□□□ 0.15
ACTB-213ENST00000493945 C5orf67F2Z3F1 127 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 H7C4K7 107 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 VNN1O95497 513 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 TYMPP19971 482 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 LHX1P48742 406 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 AARSP49588 968 aaKnown RBP eCLIP15.99■□□□□ 0.15
ACTB-213ENST00000493945 PLCB3Q01970 1234 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 SYCP1Q15431 976 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 USP41Q3LFD5 358 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 PDE12Q6L8Q7 609 aaKnown RBP15.99■□□□□ 0.15
ACTB-213ENST00000493945 CACNA2D4Q7Z3S7 1137 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 DDX53Q86TM3 631 aaKnown RBP15.99■□□□□ 0.15
ACTB-213ENST00000493945 GPR65Q8IYL9 337 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 THEM5Q8N1Q8 247 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 ZNF397Q8NF99 534 aaPredicted RBP15.99■□□□□ 0.15
ACTB-213ENST00000493945 PPP2R3CQ969Q6 453 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 CRACR2AQ9BSW2 395 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 XPO4Q9C0E2 1151 aaKnown RBP15.99■□□□□ 0.15
ACTB-213ENST00000493945 LMAN2LQ9H0V9 348 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 CXCL16Q9H2A7 254 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 SNX25Q9H3E2 840 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 GRPEL1Q9HAV7 217 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 FBXL5Q9UKA1 691 aa15.99■□□□□ 0.15
ACTB-213ENST00000493945 ITIH6Q6UXX5 1313 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 TNRC18O15417 2968 aaPredicted RBP15.98■□□□□ 0.15
ACTB-213ENST00000493945 GRXCR1A8MXD5 290 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 M0QZQ0 153 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 CYB561D2O14569 222 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 FGF18O76093 207 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 CST3P01034 146 aaPredicted RBP15.98■□□□□ 0.15
ACTB-213ENST00000493945 SOD2P04179 222 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 CCDC172P0C7W6 258 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 PON1P27169 355 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 PCSK1P29120 753 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 ERVK-21P61565 698 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 NR1I3Q14994 352 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 ZNF280DQ6N043 979 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 ANKS3Q6ZW76 656 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 APTXQ7Z2E3 356 aaKnown RBP15.98■□□□□ 0.15
ACTB-213ENST00000493945 ADGRF2Q8IZF7 708 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 HASPINQ8TF76 798 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 MRFAP1L1Q96HT8 127 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 SENP8Q96LD8 212 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 SPAG5Q96R06 1193 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 TTPALQ9BTX7 342 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 HERC2P3Q9BVR0 1158 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 NKX2-4Q9H2Z4 354 aa15.98■□□□□ 0.15
ACTB-213ENST00000493945 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.98■□□□□ 0.15
ACTB-213ENST00000493945 LCHNA4D1U4 455 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms