RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 C2orf71A6NGG8 1288 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 KPNA7A9QM74 516 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 M0QZQ0 153 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 C4BPAP04003 597 aaKnown RBP11.71□□□□□ -0.53
VPS13D-210ENST00000489961 ODC1P11926 461 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 FGFR3P22607 806 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 TKTP29401 623 aaKnown RBP11.71□□□□□ -0.53
VPS13D-210ENST00000489961 GTF2H1P32780 548 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 GCLMP48507 274 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 MCCD1P59942 119 aaPredicted RBP11.71□□□□□ -0.53
VPS13D-210ENST00000489961 ZACNQ401N2 412 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 TCEAL5Q5H9L2 206 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 RTP2Q5QGT7 225 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 C1orf220Q5T0J3 134 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 KIAA0319Q5VV43 1072 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 TDRD10Q5VZ19 366 aaKnown RBP11.71□□□□□ -0.53
VPS13D-210ENST00000489961 C11orf57Q6ZUT1 292 aaPredicted RBP11.71□□□□□ -0.53
VPS13D-210ENST00000489961 ANKS3Q6ZW76 656 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 SV2AQ7L0J3 742 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 FAM114A1Q8IWE2 563 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 CXorf38Q8TB03 319 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 AUTS2Q8WXX7 1259 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 PIK3R5Q8WYR1 880 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 HPDLQ96IR7 371 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 B3GALT6Q96L58 329 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 SENP8Q96LD8 212 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 MED15Q96RN5 788 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 CDCA3Q99618 268 aaPredicted RBP11.71□□□□□ -0.53
VPS13D-210ENST00000489961 NAT10Q9H0A0 1025 aaKnown RBP11.71□□□□□ -0.53
VPS13D-210ENST00000489961 THAP9Q9H5L6 903 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 TLE6Q9H808 572 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 MMRN2Q9H8L6 949 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 TMEM8AQ9HCN3 771 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 MAGEC2Q9UBF1 373 aaPredicted RBP11.71□□□□□ -0.53
VPS13D-210ENST00000489961 PCDHGC5Q9Y5F6 944 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 HIDE1A8MVS5 230 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 H7C4K7 107 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 CYB561D2O14569 222 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 SPTLC1O15269 473 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 NCK2O43639 380 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 LILRB3O75022 631 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 CLSTN1O94985 981 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 CST3P01034 146 aaPredicted RBP11.7□□□□□ -0.54
VPS13D-210ENST00000489961 ADH1AP07327 375 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 TYMPP19971 482 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 ATICP31939 592 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 PIK3CAP42336 1068 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 NRIP1P48552 1158 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 MXI1P50539 228 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 MARSP56192 900 aaKnown RBP11.7□□□□□ -0.54
VPS13D-210ENST00000489961 PPP3CAQ08209 521 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 NCOA4Q13772 614 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 CCDC85BQ15834 202 aaPredicted RBP11.7□□□□□ -0.54
VPS13D-210ENST00000489961 PSMD5Q16401 504 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 ANO6Q4KMQ2 910 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 VARS2Q5ST30 1063 aaKnown RBP11.7□□□□□ -0.54
VPS13D-210ENST00000489961 KRT39Q6A163 491 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 C15orf39Q6ZRI6 1047 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 ADGRD2Q7Z7M1 963 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 RBM23Q86U06 439 aaKnown RBP11.7□□□□□ -0.54
VPS13D-210ENST00000489961 METTL23Q86XA0 190 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 CREBRFQ8IUR6 639 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 MAFAQ8NHW3 353 aaPredicted RBP11.7□□□□□ -0.54
VPS13D-210ENST00000489961 ENOX1Q8TC92 643 aaKnown RBP11.7□□□□□ -0.54
VPS13D-210ENST00000489961 PPM1EQ8WY54 764 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 CNOT6LQ96LI5 555 aaKnown RBP11.7□□□□□ -0.54
VPS13D-210ENST00000489961 IMPG2Q9BZV3 1241 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 DNAJC25Q9H1X3 360 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 GDAP2Q9NXN4 497 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 FNIP2Q9P278 1114 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 CHD7Q9P2D1 2997 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 DSEQ9UL01 958 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 NFE2L3Q9Y4A8 694 aa11.7□□□□□ -0.54
VPS13D-210ENST00000489961 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.7□□□□□ -0.54
VPS13D-210ENST00000489961 PRRC2BQ5JSZ5 2229 aaKnown RBP11.7□□□□□ -0.54
VPS13D-210ENST00000489961 HUS1O60921 280 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 N4BP1O75113 896 aaKnown RBP11.69□□□□□ -0.54
VPS13D-210ENST00000489961 VNN1O95497 513 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 STAU1O95793 577 aaKnown RBP11.69□□□□□ -0.54
VPS13D-210ENST00000489961 HLA-DRAP01903 254 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 CNPP09543 421 aaKnown RBP11.69□□□□□ -0.54
VPS13D-210ENST00000489961 KLRC2P26717 231 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 MTIF2P46199 727 aaKnown RBP11.69□□□□□ -0.54
VPS13D-210ENST00000489961 NDUFV1P49821 464 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 MYL6P60660 151 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 TNNC1P63316 161 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 MYL5Q02045 173 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 YWHAHQ04917 246 aaPredicted RBP11.69□□□□□ -0.54
VPS13D-210ENST00000489961 HYAL1Q12794 435 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 DUSP6Q16828 381 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 SGSM1Q2NKQ1 1148 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 ZNF699Q32M78 642 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 ZSCAN23Q3MJ62 389 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 ZNF280DQ6N043 979 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 PRSS55Q6UWB4 352 aaPredicted RBP11.69□□□□□ -0.54
VPS13D-210ENST00000489961 PPFIBP1Q86W92 1011 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 TRIM59Q8IWR1 403 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 CCDC150Q8NCX0 1101 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 LNX1Q8TBB1 728 aaPredicted RBP11.69□□□□□ -0.54
VPS13D-210ENST00000489961 TAF4BQ92750 862 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms