RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 AOPEPQ8N6M6 819 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 TTC17Q96AE7 1141 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 ZNF503Q96F45 646 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 MARS2Q96GW9 593 aaKnown RBP6.73□□□□□ -1.33
USP48-209ENST00000487880 TLR10Q9BXR5 811 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 C22orf23Q9BZE7 217 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 BHMT2Q9H2M3 363 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 RNPEPQ9H4A4 650 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 ZNF768Q9H5H4 540 aaKnown RBP6.73□□□□□ -1.33
USP48-209ENST00000487880 RSAD1Q9HA92 442 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 SARS2Q9NP81 518 aaKnown RBP6.73□□□□□ -1.33
USP48-209ENST00000487880 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.73□□□□□ -1.33
USP48-209ENST00000487880 PCDHA6Q9UN73 950 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 ATP11BQ9Y2G3 1177 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 E9PLN8 166 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 PHGDHO43175 533 aaKnown RBP6.72□□□□□ -1.33
USP48-209ENST00000487880 PEX11BO96011 259 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 CFIP05156 583 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 SPATA31D3P0C874 917 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 NPR1P16066 1061 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 ARFIP2P53365 341 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 FAM193AP78312 1265 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 EXOSC9Q06265 439 aaKnown RBP6.72□□□□□ -1.33
USP48-209ENST00000487880 KHDC1LQ5JSQ8 128 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 MIIPQ5JXC2 388 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 SPATA31D4Q6ZUB0 917 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 SH3RF3Q8TEJ3 882 aaPredicted RBP6.72□□□□□ -1.33
USP48-209ENST00000487880 ANKS1AQ92625 1134 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 VKORC1Q9BQB6 163 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 SARGQ9BW04 601 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 KRTAP4-5Q9BYR2 181 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 SLAMF7Q9NQ25 335 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 VSX1Q9NZR4 365 aaPredicted RBP6.72□□□□□ -1.33
USP48-209ENST00000487880 HSFX1Q9UBD0 423 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 MED16Q9Y2X0 877 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 FPGT-TNNI3KV9GXZ4 949 aa6.72□□□□□ -1.33
USP48-209ENST00000487880 ZNF785A8K8V0 405 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 MYO1FO00160 1098 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 GOLIM4O00461 696 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 RNASET2O00584 256 aaKnown RBP6.71□□□□□ -1.34
USP48-209ENST00000487880 CHEK2O96017 543 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 ELANEP08246 267 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 TRIM27P14373 513 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 HDCP19113 662 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 FGFR4P22455 802 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 PHKA1P46020 1223 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 CACNB3P54284 484 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 SOX8P57073 446 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 PSMC1P62191 440 aaKnown RBP6.71□□□□□ -1.34
USP48-209ENST00000487880 PURAQ00577 322 aaKnown RBP6.71□□□□□ -1.34
USP48-209ENST00000487880 SEMA5AQ13591 1074 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 BEAN1Q3B7T3 259 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 RNF220Q5VTB9 566 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 CCSAPQ6IQ19 270 aaPredicted RBP6.71□□□□□ -1.34
USP48-209ENST00000487880 CCDC149Q6ZUS6 474 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 SPRED1Q7Z699 444 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 MAPKAPK5Q8IW41 473 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 ZNF276Q8N554 614 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 PDPRQ8NCN5 879 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 IL31RAQ8NI17 732 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 PNKPQ96T60 521 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 ZSWIM1Q9BR11 485 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 PCGF6Q9BYE7 350 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 AKIP1Q9NQ31 210 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 DKK2Q9UBU2 259 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 USP25Q9UHP3 1055 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 CPA4Q9UI42 421 aa6.71□□□□□ -1.34
USP48-209ENST00000487880 A0A1W2PPL8 197 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 CAND2O75155 1236 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 NCR1O76036 304 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 BUD31P41223 144 aaPredicted RBP6.7□□□□□ -1.34
USP48-209ENST00000487880 ZNF135P52742 658 aaPredicted RBP6.7□□□□□ -1.34
USP48-209ENST00000487880 POU6F2P78424 691 aaPredicted RBP6.7□□□□□ -1.34
USP48-209ENST00000487880 FOXE3Q13461 319 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 HABP2Q14520 560 aaPredicted RBP6.7□□□□□ -1.34
USP48-209ENST00000487880 KIAA0753Q2KHM9 967 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 CRB2Q5IJ48 1285 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 B3GNTL1Q67FW5 361 aaPredicted RBP6.7□□□□□ -1.34
USP48-209ENST00000487880 DARS2Q6PI48 645 aaKnown RBP6.7□□□□□ -1.34
USP48-209ENST00000487880 SLC17A8Q8NDX2 589 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 SLC25A43Q8WUT9 341 aaPredicted RBP6.7□□□□□ -1.34
USP48-209ENST00000487880 KBTBD7Q8WVZ9 684 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 LRTOMTQ8WZ04 291 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 PLEKHG4BQ96PX9 1271 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 GPR20Q99678 358 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 TRIM54Q9BYV2 358 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 DPH1Q9BZG8 443 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 IMPG2Q9BZV3 1241 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 TINAGL1Q9GZM7 467 aaPredicted RBP6.7□□□□□ -1.34
USP48-209ENST00000487880 PIH1D1Q9NWS0 290 aaKnown RBP6.7□□□□□ -1.34
USP48-209ENST00000487880 KCNE5Q9UJ90 142 aa6.7□□□□□ -1.34
USP48-209ENST00000487880 AATKQ6ZMQ8 1374 aa6.69□□□□□ -1.34
USP48-209ENST00000487880 CFAP69A5D8W1 941 aa6.69□□□□□ -1.34
USP48-209ENST00000487880 DNAJB5O75953 348 aa6.69□□□□□ -1.34
USP48-209ENST00000487880 EN2P19622 333 aaPredicted RBP6.69□□□□□ -1.34
USP48-209ENST00000487880 HSD11B2P80365 405 aa6.69□□□□□ -1.34
USP48-209ENST00000487880 DGCR2P98153 550 aa6.69□□□□□ -1.34
USP48-209ENST00000487880 POLD3Q15054 466 aaPredicted RBP6.69□□□□□ -1.34
USP48-209ENST00000487880 RHOUQ7L0Q8 258 aa6.69□□□□□ -1.34
USP48-209ENST00000487880 PPP1R32Q7Z5V6 425 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms