RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 NPC1O15118 1278 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 DNAJB5O75953 348 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 GJB1P08034 283 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 SNRPA1P09661 255 aaKnown RBP6.15□□□□□ -1.42
UPF3B-203ENST00000478840 RAP2AP10114 183 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 IL1R1P14778 569 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 ATP5JP18859 108 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 KLRC1P26715 233 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 SLC6A4P31645 630 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 NOMO3P69849 1222 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 POU6F2P78424 691 aaPredicted RBP6.15□□□□□ -1.42
UPF3B-203ENST00000478840 FSTL1Q12841 308 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 PFKFB4Q16877 469 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 LVRNQ6Q4G3 990 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 VGLL2Q8N8G2 317 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 TXNDC5Q8NBS9 432 aaKnown RBP6.15□□□□□ -1.42
UPF3B-203ENST00000478840 IL17REQ8NFR9 667 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 ZNF384Q8TF68 577 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 DDX17Q92841 729 aaKnown RBP6.15□□□□□ -1.42
UPF3B-203ENST00000478840 TBC1D20Q96BZ9 403 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 SENP7Q9BQF6 1050 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 MSL2Q9HCI7 577 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 TMEM8AQ9HCN3 771 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 SLC39A10Q9ULF5 831 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 MAN2B2Q9Y2E5 1009 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 PLEKHM1Q9Y4G2 1056 aa6.15□□□□□ -1.42
UPF3B-203ENST00000478840 B5MCH6 92 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 M0R3H8 397 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 AMHP03971 560 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 MED14OSP0DP75 135 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 SRGNP10124 158 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 MYL4P12829 197 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 TAL1P17542 331 aaPredicted RBP6.14□□□□□ -1.43
UPF3B-203ENST00000478840 GLDCP23378 1020 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 IRAK1P51617 712 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 MXRA7P84157 204 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 TCF15Q12870 199 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 MAPRE1Q15691 268 aaKnown RBP6.14□□□□□ -1.43
UPF3B-203ENST00000478840 MLANAQ16655 118 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 CNKSR3Q6P9H4 555 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 MMS22LQ6ZRQ5 1243 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 UNC13DQ70J99 1090 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 RNF44Q7L0R7 432 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 OR14K1Q8NGZ2 314 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 SLC35B2Q8TB61 432 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 IPCEF1Q8WWN9 437 aaPredicted RBP6.14□□□□□ -1.43
UPF3B-203ENST00000478840 CFHR4Q92496 578 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 KCNN1Q92952 543 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 HEPHQ9BQS7 1158 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 CHST8Q9H2A9 424 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 NECTIN3Q9NQS3 549 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 GJB4Q9NTQ9 266 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 GJD2Q9UKL4 321 aa6.14□□□□□ -1.43
UPF3B-203ENST00000478840 TCRBV7S2A1N4TA0A589 114 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 SLC26A4O43511 780 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 HAUS5O94927 633 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 CYP1A1P04798 512 aaPredicted RBP6.13□□□□□ -1.43
UPF3B-203ENST00000478840 GNAI2P04899 355 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 DHRS4L1P0CG22 281 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 TXNP10599 105 aaKnown RBP6.13□□□□□ -1.43
UPF3B-203ENST00000478840 SERPINF1P36955 418 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 SLC11A2P49281 568 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 CARSP49589 748 aaKnown RBP6.13□□□□□ -1.43
UPF3B-203ENST00000478840 NPEPPSP55786 919 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 DUSP8Q13202 625 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 PTK2BQ14289 1009 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 ACAP1Q15027 740 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 MCTP1Q6DN14 999 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 CLEC4GQ6UXB4 293 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 KRT28Q7Z3Y7 464 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 RALYLQ86SE5 291 aaKnown RBP6.13□□□□□ -1.43
UPF3B-203ENST00000478840 ANKRD18AQ8IVF6 992 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 OR56A3Q8NH54 315 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 SCAMP4Q969E2 229 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 TRIM63Q969Q1 353 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 C18orf8Q96DM3 657 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 LTV1Q96GA3 475 aaPredicted RBP6.13□□□□□ -1.43
UPF3B-203ENST00000478840 RPL10LQ96L21 214 aaKnown RBP6.13□□□□□ -1.43
UPF3B-203ENST00000478840 PWWP2AQ96N64 755 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 MAGEH1Q9H213 219 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 IL23AQ9NPF7 189 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 SLAMF7Q9NQ25 335 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 PNPLA7Q6ZV29 1317 aa6.13□□□□□ -1.43
UPF3B-203ENST00000478840 KIAA0391O15091 583 aaKnown RBP6.12□□□□□ -1.43
UPF3B-203ENST00000478840 HOXA3O43365 443 aaPredicted RBP6.12□□□□□ -1.43
UPF3B-203ENST00000478840 KCNQ3O43525 872 aa6.12□□□□□ -1.43
UPF3B-203ENST00000478840 UNC5CO95185 931 aa6.12□□□□□ -1.43
UPF3B-203ENST00000478840 CNOT4O95628 575 aaKnown RBP6.12□□□□□ -1.43
UPF3B-203ENST00000478840 CHEK2O96017 543 aa6.12□□□□□ -1.43
UPF3B-203ENST00000478840 ALAS1P13196 640 aa6.12□□□□□ -1.43
UPF3B-203ENST00000478840 PHKA1P46020 1223 aa6.12□□□□□ -1.43
UPF3B-203ENST00000478840 ARL4CP56559 192 aa6.12□□□□□ -1.43
UPF3B-203ENST00000478840 CLRN1P58418 232 aa6.12□□□□□ -1.43
UPF3B-203ENST00000478840 BMT2Q1RMZ1 405 aa6.12□□□□□ -1.43
UPF3B-203ENST00000478840 RNF151Q2KHN1 245 aa6.12□□□□□ -1.43
UPF3B-203ENST00000478840 FKBP15Q5T1M5 1219 aa6.12□□□□□ -1.43
UPF3B-203ENST00000478840 ZNF529Q6P280 563 aa6.12□□□□□ -1.43
UPF3B-203ENST00000478840 CYP26C1Q6V0L0 522 aa6.12□□□□□ -1.43
UPF3B-203ENST00000478840 RFX8Q6ZV50 586 aa6.12□□□□□ -1.43
UPF3B-203ENST00000478840 CARFQ8N187 725 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms