RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 FOXB1Q99853 325 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 ZDHHC5Q9C0B5 715 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 SWAP70Q9UH65 585 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 SLC4A4Q9Y6R1 1079 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 PMF1-BGLAPU3KQ54 211 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 POLR2AP24928 1970 aaKnown RBP7.31□□□□□ -1.24
PTCD3-208ENST00000469585 FLT1P17948 1338 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 UBA6A0AVT1 1052 aaPredicted RBP7.31□□□□□ -1.24
PTCD3-208ENST00000469585 LCHNA4D1U4 455 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 TCAF2A6NFQ2 919 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 MPHOSPH10O00566 681 aaKnown RBP7.31□□□□□ -1.24
PTCD3-208ENST00000469585 EIF5BO60841 1220 aaKnown RBP7.31□□□□□ -1.24
PTCD3-208ENST00000469585 ASNSP08243 561 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 ADD2P35612 726 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 ERVK-21P61565 698 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 DLX2Q07687 328 aaPredicted RBP7.31□□□□□ -1.24
PTCD3-208ENST00000469585 FAPQ12884 760 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 SMAD4Q13485 552 aaKnown RBP7.31□□□□□ -1.24
PTCD3-208ENST00000469585 MTMR1Q13613 665 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 KIF22Q14807 665 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 BRDTQ58F21 947 aaPredicted RBP7.31□□□□□ -1.24
PTCD3-208ENST00000469585 PRR31Q5SQ13 230 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 PHF19Q5T6S3 580 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 CNKSR3Q6P9H4 555 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 LRSAM1Q6UWE0 723 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 FRMD7Q6ZUT3 714 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 FASTKD5Q7L8L6 764 aaKnown RBP7.31□□□□□ -1.24
PTCD3-208ENST00000469585 CNTD1Q8N815 330 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 E2F7Q96AV8 911 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 ZBTB8AQ96BR9 441 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 OPTNQ96CV9 577 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 ZSWIM3Q96MP5 696 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 CLIC6Q96NY7 704 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 SLC38A3Q99624 504 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 NAPBQ9H115 298 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 SEMA4AQ9H3S1 761 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 SH2D4AQ9H788 454 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 TOPORSQ9NS56 1045 aaPredicted RBP7.31□□□□□ -1.24
PTCD3-208ENST00000469585 SPATA6Q9NWH7 488 aaPredicted RBP7.31□□□□□ -1.24
PTCD3-208ENST00000469585 SAGE1Q9NXZ1 904 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 TMOD4Q9NZQ9 345 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 USP36Q9P275 1121 aaKnown RBP7.31□□□□□ -1.24
PTCD3-208ENST00000469585 ARHGAP20Q9P2F6 1191 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 ARPP21Q9UBL0 812 aaPredicted RBP7.31□□□□□ -1.24
PTCD3-208ENST00000469585 SAP30BPQ9UHR5 308 aaKnown RBP7.31□□□□□ -1.24
PTCD3-208ENST00000469585 SERPINB13Q9UIV8 391 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 MSRAQ9UJ68 235 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 PCDHAC2Q9Y5I4 1007 aa7.31□□□□□ -1.24
PTCD3-208ENST00000469585 COL2A1P02458 1487 aaPredicted RBP7.3□□□□□ -1.24
PTCD3-208ENST00000469585 KATNA1O75449 491 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 HSPA1AP0DMV8 641 aaKnown RBP7.3□□□□□ -1.24
PTCD3-208ENST00000469585 HSPA1BP0DMV9 641 aaKnown RBP7.3□□□□□ -1.24
PTCD3-208ENST00000469585 CAP1Q01518 475 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 KIF23Q02241 960 aaPredicted RBP7.3□□□□□ -1.24
PTCD3-208ENST00000469585 PPATQ06203 517 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 MOGSQ13724 837 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 VGLL4Q14135 290 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 PDCD1Q15116 288 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 CERKLQ49MI3 558 aaPredicted RBP7.3□□□□□ -1.24
PTCD3-208ENST00000469585 VWA3BQ502W6 1294 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 TTC38Q5R3I4 469 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 TSHZ3Q63HK5 1081 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 RASAL3Q86YV0 1011 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 PHYKPLQ8IUZ5 450 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 CCAR1Q8IX12 1150 aaKnown RBP7.3□□□□□ -1.24
PTCD3-208ENST00000469585 SCYL3Q8IZE3 742 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 BTBD2Q9BX70 525 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 HELLSQ9NRZ9 838 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 KCND1Q9NSA2 647 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 STAP2Q9UGK3 403 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 ZFP69BQ9UJL9 534 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 CNOT6Q9ULM6 557 aaKnown RBP7.3□□□□□ -1.24
PTCD3-208ENST00000469585 NOC2LQ9Y3T9 749 aaKnown RBP7.3□□□□□ -1.24
PTCD3-208ENST00000469585 KCTD3Q9Y597 815 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 RFX7Q2KHR2 1363 aa7.3□□□□□ -1.24
PTCD3-208ENST00000469585 GLRBP48167 497 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 USP14P54578 494 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 RHBDL3P58872 404 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 DYNLL1P63167 89 aaKnown RBP7.29□□□□□ -1.24
PTCD3-208ENST00000469585 SLC6A3Q01959 620 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 PPIL2Q13356 520 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 MYBPC3Q14896 1274 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 STILQ15468 1287 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 MOB2Q70IA6 237 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 KANSL1Q7Z3B3 1105 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 FERMT3Q86UX7 667 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 ZNF444Q8N0Y2 327 aaPredicted RBP7.29□□□□□ -1.24
PTCD3-208ENST00000469585 STPG3Q8N7X2 389 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 C7orf31Q8N865 590 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.29□□□□□ -1.24
PTCD3-208ENST00000469585 TEPSINQ96N21 525 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 PWWP2AQ96N64 755 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 TUBGCP5Q96RT8 1024 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 TACO1Q9BSH4 297 aaKnown RBP7.29□□□□□ -1.24
PTCD3-208ENST00000469585 POFUT1Q9H488 388 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 ARMT1Q9H993 441 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 CTNNA3Q9UI47 895 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 CTDP1Q9Y5B0 961 aaPredicted RBP7.29□□□□□ -1.24
PTCD3-208ENST00000469585 ATRNL1Q5VV63 1379 aa7.29□□□□□ -1.24
PTCD3-208ENST00000469585 ZNF646O15015 1829 aaPredicted RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms