RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 WRAP73Q9P2S5 460 aaPredicted RBP5.9□□□□□ -1.46
PTPN4-209ENST00000469511 ADAM28Q9UKQ2 775 aa5.9□□□□□ -1.46
PTPN4-209ENST00000469511 BRPF3Q9ULD4 1205 aa5.9□□□□□ -1.46
PTPN4-209ENST00000469511 DNMT3AQ9Y6K1 912 aaPredicted RBP5.9□□□□□ -1.46
PTPN4-209ENST00000469511 ZFP37Q9Y6Q3 630 aaPredicted RBP5.9□□□□□ -1.46
PTPN4-209ENST00000469511 ZNF638Q14966 1978 aaKnown RBP5.89□□□□□ -1.47
PTPN4-209ENST00000469511 NAV2Q8IVL1 2488 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 ITPR1Q14643 2758 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 CASTOR2A6NHX0 329 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 WDR64B1ANS9 1081 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 B4GALT5O43286 388 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 EXTL3O43909 919 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 MOSPD3O75425 235 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 ECI2O75521 394 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 KIF4AO95239 1232 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 ABL1P00519 1130 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 RHOP08100 348 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 HNRNPA1P09651 372 aaKnown RBP eCLIP5.89□□□□□ -1.47
PTPN4-209ENST00000469511 ZNF806P0C7X5 589 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 CHMLP26374 656 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 GDI1P31150 447 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 OR1D2P34982 312 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 NOVA1P51513 510 aaKnown RBP5.89□□□□□ -1.47
PTPN4-209ENST00000469511 CCR3P51677 355 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 AP3B2Q13367 1082 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 NAA30Q147X3 362 aaPredicted RBP5.89□□□□□ -1.47
PTPN4-209ENST00000469511 PSMD5Q16401 504 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 PABPC1LQ4VXU2 614 aaKnown RBP5.89□□□□□ -1.47
PTPN4-209ENST00000469511 PRSS36Q5K4E3 855 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 FAM171A1Q5VUB5 890 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 KIAA1211LQ6NV74 962 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 B3GNT9Q6UX72 402 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 CD300LGQ6UXG3 332 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 VITQ6UXI7 678 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 CEP68Q76N32 757 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 ZNF410Q86VK4 478 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 EXOC6Q8TAG9 804 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 PRPF31Q8WWY3 499 aaKnown RBP5.89□□□□□ -1.47
PTPN4-209ENST00000469511 COLEC11Q9BWP8 271 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 BRD9Q9H8M2 597 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 BARHL2Q9NY43 387 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 SNTG2Q9NY99 539 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 KANSL3Q9P2N6 904 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 SSX2IPQ9Y2D8 614 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 USP20Q9Y2K6 914 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 MRPS23Q9Y3D9 190 aaKnown RBP5.89□□□□□ -1.47
PTPN4-209ENST00000469511 RBM8AQ9Y5S9 174 aaKnown RBP5.89□□□□□ -1.47
PTPN4-209ENST00000469511 PIAS3Q9Y6X2 628 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 KIAA1549LQ6ZVL6 1849 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 CNTNAP2Q9UHC6 1331 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 ANK1P16157 1881 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 WDFY3Q8IZQ1 3526 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 CEP192Q8TEP8 1941 aa5.89□□□□□ -1.47
PTPN4-209ENST00000469511 ACACAQ13085 2346 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 DMXL2Q8TDJ6 3036 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 DENND4CQ5VZ89 1909 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 SLC38A8A6NNN8 435 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 C4orf47A7E2U8 309 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 I3L4J1 428 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 HIP1O00291 1037 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 ARNTLO00327 626 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 PTGESO14684 152 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 DCLK1O15075 740 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 TSPAN1O60635 241 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 TADA2AO75478 443 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 PSMD10O75832 226 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 EPN2O95208 641 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 SEC24AO95486 1093 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 CAPNS1P04632 268 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 CIITAP33076 1130 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 RAP1GAPP47736 663 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 NRLP54845 237 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 NUCB1Q02818 461 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 ZNF252P-AS1Q0IIN9 211 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 LAMTOR4Q0VGL1 99 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 ZNF211Q13398 564 aaPredicted RBP5.88□□□□□ -1.47
PTPN4-209ENST00000469511 NAB2Q15742 525 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 ECM1Q16610 540 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 RTN1Q16799 776 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 C4orf17Q53FE4 359 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 XKR3Q5GH77 459 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 COX20Q5RI15 118 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 SH3PXD2AQ5TCZ1 1133 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 LIN9Q5TKA1 542 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 APOA5Q6Q788 366 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 CASC1Q6TDU7 716 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 MIER3Q7Z3K6 550 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 TRIM46Q7Z4K8 759 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 LONP2Q86WA8 852 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 SPEM1Q8N4L4 309 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 C12orf50Q8NA57 414 aaPredicted RBP5.88□□□□□ -1.47
PTPN4-209ENST00000469511 ZCCHC14Q8WYQ9 949 aaKnown RBP5.88□□□□□ -1.47
PTPN4-209ENST00000469511 PIK3R5Q8WYR1 880 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 DDX1Q92499 740 aaKnown RBP5.88□□□□□ -1.47
PTPN4-209ENST00000469511 DNASE1L2Q92874 299 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 SLC5A5Q92911 643 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 ELSPBP1Q96BH3 223 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 LRRC3BQ96PB8 259 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 INO80BQ9C086 356 aaPredicted RBP5.88□□□□□ -1.47
PTPN4-209ENST00000469511 SAP130Q9H0E3 1048 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms