RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 DNMT3BQ9UBC3 853 aaKnown RBP20.69■□□□□ 0.9
COL7A1-207ENST00000467985 AFF4Q9UHB7 1163 aaKnown RBP20.69■□□□□ 0.9
COL7A1-207ENST00000467985 OR6C75A6NL08 312 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 TISP43B9A030 160 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 NFICP08651 508 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 CPB1P15086 417 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 PTPN2P17706 415 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 TYMPP19971 482 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 C9orf57Q5W0N0 161 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 STXBP4Q6ZWJ1 553 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 NT5DC4Q86YG4 428 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 SYCP3Q8IZU3 236 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 ELMOD1Q8N336 334 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 IQUBQ8NA54 791 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 ITFG1Q8TB96 612 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 KCNG4Q8TDN1 519 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 HCFC1R1Q9NWW0 138 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 MRPS23Q9Y3D9 190 aaKnown RBP20.68■□□□□ 0.9
COL7A1-207ENST00000467985 INSL5Q9Y5Q6 135 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 DOCK6Q96HP0 2047 aa20.68■□□□□ 0.9
COL7A1-207ENST00000467985 LDHAP00338 332 aaKnown RBP20.67■□□□□ 0.9
COL7A1-207ENST00000467985 F13A1P00488 732 aa20.67■□□□□ 0.9
COL7A1-207ENST00000467985 ODC1P11926 461 aa20.67■□□□□ 0.9
COL7A1-207ENST00000467985 ADSSP30520 456 aa20.67■□□□□ 0.9
COL7A1-207ENST00000467985 GUCY2FP51841 1108 aa20.67■□□□□ 0.9
COL7A1-207ENST00000467985 ADCY1Q08828 1119 aa20.67■□□□□ 0.9
COL7A1-207ENST00000467985 SIX5Q8N196 739 aa20.67■□□□□ 0.9
COL7A1-207ENST00000467985 TMEM206Q9H813 350 aa20.67■□□□□ 0.9
COL7A1-207ENST00000467985 KBTBD4Q9NVX7 518 aa20.67■□□□□ 0.9
COL7A1-207ENST00000467985 GDE1Q9NZC3 331 aa20.67■□□□□ 0.9
COL7A1-207ENST00000467985 NUMBLQ9Y6R0 609 aa20.67■□□□□ 0.9
COL7A1-207ENST00000467985 WDR87Q6ZQQ6 2873 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 ANO9A1A5B4 782 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 PIRO00625 290 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 NARSO43776 548 aaKnown RBP20.66■□□□□ 0.9
COL7A1-207ENST00000467985 SEC24AO95486 1093 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 RHOP08100 348 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 GARTP22102 1010 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 KCNA1Q09470 495 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 E2F4Q16254 413 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 OVOS1Q6IE37 1185 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 CRELD2Q6UXH1 353 aaPredicted RBP20.66■□□□□ 0.9
COL7A1-207ENST00000467985 MAGEF1Q9HAY2 307 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 SLC2A4RGQ9NR83 387 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 DPP3Q9NY33 737 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 DSEQ9UL01 958 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 CFAP45Q9UL16 551 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 TIMM13Q9Y5L4 95 aaPredicted RBP20.66■□□□□ 0.9
COL7A1-207ENST00000467985 ANK1P16157 1881 aa20.66■□□□□ 0.9
COL7A1-207ENST00000467985 ZNF197O14709 1029 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 PPEF2O14830 753 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 GALR2O43603 387 aaPredicted RBP20.65■□□□□ 0.9
COL7A1-207ENST00000467985 MICAL2O94851 1124 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 CFHP08603 1231 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 CASP5P51878 434 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 MYBPC2Q14324 1141 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 FOXD4L5Q5VV16 416 aaPredicted RBP20.65■□□□□ 0.9
COL7A1-207ENST00000467985 IQCEQ6IPM2 695 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 CNNM4Q6P4Q7 775 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 RNF19BQ6ZMZ0 732 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 NPAS3Q8IXF0 933 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 TMEM130Q8N3G9 435 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 FLCNQ8NFG4 579 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 FOXD4L4Q8WXT5 416 aaPredicted RBP20.65■□□□□ 0.9
COL7A1-207ENST00000467985 FGF14Q92915 247 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 SENP8Q96LD8 212 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 ZNF512Q96ME7 567 aaPredicted RBP20.65■□□□□ 0.9
COL7A1-207ENST00000467985 FAM213AQ9BRX8 229 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 IKZF4Q9H2S9 585 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 NOTCH4Q99466 2003 aa20.65■□□□□ 0.9
COL7A1-207ENST00000467985 KIAA0391O15091 583 aaKnown RBP20.64■□□□□ 0.89
COL7A1-207ENST00000467985 AOC1P19801 751 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 ME1P48163 572 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 TCF15Q12870 199 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 GPR17Q13304 367 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 PLD1Q13393 1074 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 ARMCX5Q6P1M9 558 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 SHC4Q6S5L8 630 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 PARM1Q6UWI2 310 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 TMEM105Q8N8V8 129 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 LEMD2Q8NC56 503 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 DHX58Q96C10 678 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 RTP3Q9BQQ7 232 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 CORO1BQ9BR76 489 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 TRIM9Q9C026 710 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 USP34Q70CQ2 3546 aa20.64■□□□□ 0.89
COL7A1-207ENST00000467985 CYP11A1P05108 521 aa20.63■□□□□ 0.89
COL7A1-207ENST00000467985 NPR3P17342 541 aa20.63■□□□□ 0.89
COL7A1-207ENST00000467985 RFX1P22670 979 aa20.63■□□□□ 0.89
COL7A1-207ENST00000467985 PNPLA4P41247 253 aa20.63■□□□□ 0.89
COL7A1-207ENST00000467985 TAF6P49848 677 aa20.63■□□□□ 0.89
COL7A1-207ENST00000467985 FOXD4L6Q3SYB3 417 aaPredicted RBP20.63■□□□□ 0.89
COL7A1-207ENST00000467985 CYP4A22Q5TCH4 519 aa20.63■□□□□ 0.89
COL7A1-207ENST00000467985 FOXD4L3Q6VB84 417 aaPredicted RBP20.63■□□□□ 0.89
COL7A1-207ENST00000467985 PDZD4Q76G19 769 aaPredicted RBP20.63■□□□□ 0.89
COL7A1-207ENST00000467985 METTL23Q86XA0 190 aa20.63■□□□□ 0.89
COL7A1-207ENST00000467985 BRSK2Q8IWQ3 736 aa20.63■□□□□ 0.89
COL7A1-207ENST00000467985 CACTINQ8WUQ7 758 aaKnown RBP20.63■□□□□ 0.89
COL7A1-207ENST00000467985 PYM1Q9BRP8 204 aaKnown RBP20.63■□□□□ 0.89
COL7A1-207ENST00000467985 FAM13BQ9NYF5 915 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms