RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 TBC1D7Q9P0N9 293 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 DNMT3BQ9UBC3 853 aaKnown RBP13.06□□□□□ -0.32
USP40-210ENST00000454354 AFF4Q9UHB7 1163 aaKnown RBP13.06□□□□□ -0.32
USP40-210ENST00000454354 CDH7Q9ULB5 785 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 KCNH3Q9ULD8 1083 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 OBSL1O75147 1896 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 COL4A2P08572 1712 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 SEC24AO95486 1093 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 AVPR2P30518 371 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 ELF1P32519 619 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 NUBP1P53384 320 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 YWHAHQ04917 246 aaPredicted RBP13.05□□□□□ -0.32
USP40-210ENST00000454354 PABPC1LQ4VXU2 614 aaKnown RBP13.05□□□□□ -0.32
USP40-210ENST00000454354 FOXD4L5Q5VV16 416 aaPredicted RBP13.05□□□□□ -0.32
USP40-210ENST00000454354 BRSK2Q8IWQ3 736 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 EFCAB13Q8IY85 973 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 IQUBQ8NA54 791 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 PRSS33Q8NF86 280 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 RSAD2Q8WXG1 361 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 FOXD4L4Q8WXT5 416 aaPredicted RBP13.05□□□□□ -0.32
USP40-210ENST00000454354 FAM212AQ96EL1 285 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 TMEM206Q9H813 350 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 HCFC1R1Q9NWW0 138 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 POLIQ9UNA4 740 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 INSL5Q9Y5Q6 135 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 MYO15AQ9UKN7 3530 aa13.05□□□□□ -0.32
USP40-210ENST00000454354 DMDP11532 3685 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 OR6C75A6NL08 312 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 PRRG1O14668 218 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 SPTLC1O15269 473 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 NARSO43776 548 aaKnown RBP13.04□□□□□ -0.32
USP40-210ENST00000454354 LDHAP00338 332 aaKnown RBP13.04□□□□□ -0.32
USP40-210ENST00000454354 LRG1P02750 347 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 CYP11A1P05108 521 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 SRFP11831 508 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 ODC1P11926 461 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 CPB1P15086 417 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 ARPP19P56211 112 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 AMPD3Q01432 767 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 IER5LQ5T953 404 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 RESP18Q5W5W9 173 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 OVOS1Q6IE37 1185 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 DSTYKQ6XUX3 929 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 NPAS3Q8IXF0 933 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 SLC44A3Q8N4M1 653 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 ITFG1Q8TB96 612 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 FGF13Q92913 245 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 DHX58Q96C10 678 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 C7orf25Q9BPX7 421 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 CYP4F11Q9HBI6 524 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 CFAP45Q9UL16 551 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 PCDHA7Q9UN72 937 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 NUMBLQ9Y6R0 609 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 USP34Q70CQ2 3546 aa13.04□□□□□ -0.32
USP40-210ENST00000454354 PTPRDP23468 1912 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 KIAA0391O15091 583 aaKnown RBP13.03□□□□□ -0.32
USP40-210ENST00000454354 EIF3DO15371 548 aaKnown RBP eCLIP13.03□□□□□ -0.32
USP40-210ENST00000454354 PRPF6O94906 941 aaKnown RBP13.03□□□□□ -0.32
USP40-210ENST00000454354 VNN2O95498 520 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 RHOP08100 348 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 PTPN2P17706 415 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 HOXD11P31277 338 aaPredicted RBP13.03□□□□□ -0.32
USP40-210ENST00000454354 ME1P48163 572 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 WNT7BP56706 349 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 NHLH1Q02575 133 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 DNM1Q05193 864 aaKnown RBP13.03□□□□□ -0.32
USP40-210ENST00000454354 EHHADHQ08426 723 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 ADCY1Q08828 1119 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 GPR17Q13304 367 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 MYBPC2Q14324 1141 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 SLC5A9Q2M3M2 681 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 FOXD4L6Q3SYB3 417 aaPredicted RBP13.03□□□□□ -0.32
USP40-210ENST00000454354 PRSS36Q5K4E3 855 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 CWF19L1Q69YN2 538 aaKnown RBP13.03□□□□□ -0.32
USP40-210ENST00000454354 ASTLQ6HA08 431 aaPredicted RBP13.03□□□□□ -0.32
USP40-210ENST00000454354 FOXD4L3Q6VB84 417 aaPredicted RBP13.03□□□□□ -0.32
USP40-210ENST00000454354 RNF19BQ6ZMZ0 732 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 STXBP4Q6ZWJ1 553 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 MTSS1LQ765P7 747 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 EPM2AIP1Q7L775 607 aaPredicted RBP13.03□□□□□ -0.32
USP40-210ENST00000454354 USP37Q86T82 979 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 SYCP3Q8IZU3 236 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 ZSWIM2Q8NEG5 633 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 FGF14Q92915 247 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 SAAL1Q96ER3 474 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 SENP8Q96LD8 212 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 CBWD1Q9BRT8 395 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 FAM213AQ9BRX8 229 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 SLC2A4RGQ9NR83 387 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 DPP3Q9NY33 737 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 GDE1Q9NZC3 331 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 WNT16Q9UBV4 365 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 RCOR1Q9UKL0 485 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 TIMM13Q9Y5L4 95 aaPredicted RBP13.03□□□□□ -0.32
USP40-210ENST00000454354 PATJQ8NI35 1801 aa13.03□□□□□ -0.32
USP40-210ENST00000454354 KIF26AQ9ULI4 1882 aaPredicted RBP13.02□□□□□ -0.32
USP40-210ENST00000454354 GREB1Q4ZG55 1949 aa13.02□□□□□ -0.32
USP40-210ENST00000454354 TICRRQ7Z2Z1 1910 aa13.02□□□□□ -0.32
USP40-210ENST00000454354 ZNF638Q14966 1978 aaKnown RBP13.02□□□□□ -0.32
USP40-210ENST00000454354 POLR2DO15514 142 aaKnown RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms