RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ENPEPQ07075 957 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 TMEM132DQ14C87 1099 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 PAN2Q504Q3 1202 aaKnown RBP14.43□□□□□ -0.1
LIMS1-204ENST00000409441 C1orf220Q5T0J3 134 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 FBXO38Q6PIJ6 1188 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 RSPH1Q8WYR4 309 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 ZNF516Q92618 1163 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 PPP1R10Q96QC0 940 aaKnown RBP14.43□□□□□ -0.1
LIMS1-204ENST00000409441 YME1L1Q96TA2 773 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 RAD9AQ99638 391 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 TBC1D13Q9NVG8 400 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 DERAQ9Y315 318 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 C2CD2Q9Y426 696 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 INSL6Q9Y581 213 aa14.43□□□□□ -0.1
LIMS1-204ENST00000409441 LRRC53A6NM62 1247 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 LRRIQ3A6PVS8 624 aaPredicted RBP14.42□□□□□ -0.1
LIMS1-204ENST00000409441 GRXCR1A8MXD5 290 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 EPHB6O15197 1021 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 TRIM49P0CI25 452 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 TRIM49CP0CI26 452 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 HTRA4P83105 476 aaPredicted RBP14.42□□□□□ -0.1
LIMS1-204ENST00000409441 RNASELQ05823 741 aaKnown RBP14.42□□□□□ -0.1
LIMS1-204ENST00000409441 DUOXA2Q1HG44 320 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 DCAF17Q5H9S7 520 aaPredicted RBP14.42□□□□□ -0.1
LIMS1-204ENST00000409441 TCERG1LQ5VWI1 586 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 LMBRD2Q68DH5 695 aaPredicted RBP14.42□□□□□ -0.1
LIMS1-204ENST00000409441 FAM109BQ6ICB4 259 aaPredicted RBP14.42□□□□□ -0.1
LIMS1-204ENST00000409441 RRAGAQ7L523 313 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 NT5DC4Q86YG4 428 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 WDR49Q8IV35 697 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 EFCAB13Q8IY85 973 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 C18orf25Q96B23 403 aaPredicted RBP14.42□□□□□ -0.1
LIMS1-204ENST00000409441 FAM84AQ96KN4 292 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 CGRRF1Q99675 332 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 SLC38A7Q9NVC3 462 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 ARHGAP20Q9P2F6 1191 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 GUCA1BQ9UMX6 200 aa14.42□□□□□ -0.1
LIMS1-204ENST00000409441 TLL1O43897 1013 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 DDHD2O94830 711 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 RABGGTBP53611 331 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 KCNH2Q12809 1159 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 KIF5AQ12840 1032 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 GRIK3Q13003 919 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 BTG3Q14201 252 aaPredicted RBP14.41□□□□□ -0.1
LIMS1-204ENST00000409441 NAB2Q15742 525 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 ZNF280BQ86YH2 543 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 TDHQ8IZJ6 230 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 OR5B17Q8NGF7 314 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 SLC35C1Q96A29 364 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 FAM193BQ96PV7 902 aaPredicted RBP14.41□□□□□ -0.1
LIMS1-204ENST00000409441 LSM14BQ9BX40 385 aaKnown RBP14.41□□□□□ -0.1
LIMS1-204ENST00000409441 MRPL9Q9BYD2 267 aaKnown RBP14.41□□□□□ -0.1
LIMS1-204ENST00000409441 PRO3102Q9H379 93 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 RC3H2Q9HBD1 1191 aaKnown RBP14.41□□□□□ -0.1
LIMS1-204ENST00000409441 PLCB1Q9NQ66 1216 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 UBQLN1Q9UMX0 589 aaKnown RBP14.41□□□□□ -0.1
LIMS1-204ENST00000409441 PTPRJQ12913 1337 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.41□□□□□ -0.1
LIMS1-204ENST00000409441 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.41□□□□□ -0.1
LIMS1-204ENST00000409441 ANO9A1A5B4 782 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 XPOTO43592 962 aaKnown RBP14.41□□□□□ -0.1
LIMS1-204ENST00000409441 NOL4O94818 638 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 ABL1P00519 1130 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 AFPP02771 609 aaKnown RBP14.41□□□□□ -0.1
LIMS1-204ENST00000409441 CYP3A5P20815 502 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 GCLMP48507 274 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 KIF11P52732 1056 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 AP3M2P53677 418 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 AMPD2Q01433 879 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 SOX4Q06945 474 aaPredicted RBP14.41□□□□□ -0.1
LIMS1-204ENST00000409441 PPP3CAQ08209 521 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 SFMBT2Q5VUG0 894 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 CMTR2Q8IYT2 770 aaKnown RBP14.41□□□□□ -0.1
LIMS1-204ENST00000409441 BEST2Q8NFU1 509 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 DEF6Q9H4E7 631 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 DPP3Q9NY33 737 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 OGFRQ9NZT2 677 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 TUBGCP4Q9UGJ1 667 aa14.41□□□□□ -0.1
LIMS1-204ENST00000409441 PJA2O43164 708 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 TNNC2P02585 160 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 C4BPAP04003 597 aaKnown RBP14.4□□□□□ -0.1
LIMS1-204ENST00000409441 SERPING1P05155 500 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 TMEM191BP0C7N4 346 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 GTF2H1P32780 548 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 EIF4A3P38919 411 aaKnown RBP14.4□□□□□ -0.1
LIMS1-204ENST00000409441 GUCY2FP51841 1108 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 TUSC3Q13454 348 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 SV2AQ7L0J3 742 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 TRAPPC11Q7Z392 1133 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 LRRC43Q8N309 656 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 TMEM130Q8N3G9 435 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 ANKRD36BP1Q96IX9 119 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 MTMR12Q9C0I1 747 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 NRDE2Q9H7Z3 1164 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 HCSTQ9UBK5 93 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 MYO6Q9UM54 1294 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 PCDHA13Q9Y5I0 950 aa14.4□□□□□ -0.1
LIMS1-204ENST00000409441 GTPBP10A4D1E9 387 aaKnown RBP14.39□□□□□ -0.11
LIMS1-204ENST00000409441 AKR1B10O60218 316 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 B4GALT3O60512 393 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms