RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 FHOD1Q9Y613 1164 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 KPNA7A9QM74 516 aa19.39■□□□□ 0.69
SDC1-203ENST00000403076 STAU1O95793 577 aaKnown RBP19.39■□□□□ 0.69
SDC1-203ENST00000403076 RFX1P22670 979 aa19.39■□□□□ 0.69
SDC1-203ENST00000403076 CASP14P31944 242 aa19.39■□□□□ 0.69
SDC1-203ENST00000403076 LILRA4P59901 499 aa19.39■□□□□ 0.69
SDC1-203ENST00000403076 IQCEQ6IPM2 695 aa19.39■□□□□ 0.69
SDC1-203ENST00000403076 SCARA5Q6ZMJ2 495 aa19.39■□□□□ 0.69
SDC1-203ENST00000403076 TMEM175Q9BSA9 504 aa19.39■□□□□ 0.69
SDC1-203ENST00000403076 COLEC11Q9BWP8 271 aa19.39■□□□□ 0.69
SDC1-203ENST00000403076 EDEM3Q9BZQ6 932 aa19.39■□□□□ 0.69
SDC1-203ENST00000403076 VRTNQ9H8Y1 702 aa19.39■□□□□ 0.69
SDC1-203ENST00000403076 IMPACTQ9P2X3 320 aa19.39■□□□□ 0.69
SDC1-203ENST00000403076 POLIQ9UNA4 740 aa19.39■□□□□ 0.69
SDC1-203ENST00000403076 LUC7L2Q9Y383 392 aaKnown RBP19.39■□□□□ 0.69
SDC1-203ENST00000403076 DAAM1Q9Y4D1 1078 aa19.39■□□□□ 0.69
SDC1-203ENST00000403076 SNX9Q9Y5X1 595 aa19.39■□□□□ 0.69
SDC1-203ENST00000403076 TLL1O43897 1013 aa19.38■□□□□ 0.69
SDC1-203ENST00000403076 GYPCP04921 128 aa19.38■□□□□ 0.69
SDC1-203ENST00000403076 TBXAS1P24557 533 aaPredicted RBP19.38■□□□□ 0.69
SDC1-203ENST00000403076 ALDH7A1P49419 539 aaKnown RBP19.38■□□□□ 0.69
SDC1-203ENST00000403076 RGS19P49795 217 aa19.38■□□□□ 0.69
SDC1-203ENST00000403076 GCNT1Q02742 428 aa19.38■□□□□ 0.69
SDC1-203ENST00000403076 CUL2Q13617 745 aa19.38■□□□□ 0.69
SDC1-203ENST00000403076 RASIP1Q5U651 963 aa19.38■□□□□ 0.69
SDC1-203ENST00000403076 DSTYKQ6XUX3 929 aa19.38■□□□□ 0.69
SDC1-203ENST00000403076 HASPINQ8TF76 798 aa19.38■□□□□ 0.69
SDC1-203ENST00000403076 RAD9AQ99638 391 aa19.38■□□□□ 0.69
SDC1-203ENST00000403076 GDF15Q99988 308 aa19.38■□□□□ 0.69
SDC1-203ENST00000403076 RC3H2Q9HBD1 1191 aaKnown RBP19.38■□□□□ 0.69
SDC1-203ENST00000403076 FBXL5Q9UKA1 691 aa19.38■□□□□ 0.69
SDC1-203ENST00000403076 CAPN11Q9UMQ6 739 aa19.38■□□□□ 0.69
SDC1-203ENST00000403076 FNDC1Q4ZHG4 1894 aaPredicted RBP19.38■□□□□ 0.69
SDC1-203ENST00000403076 CEP290O15078 2479 aa19.37■□□□□ 0.69
SDC1-203ENST00000403076 NRP1O14786 923 aa19.37■□□□□ 0.69
SDC1-203ENST00000403076 SPTLC1O15269 473 aa19.37■□□□□ 0.69
SDC1-203ENST00000403076 HUS1O60921 280 aa19.37■□□□□ 0.69
SDC1-203ENST00000403076 TADA2AO75478 443 aa19.37■□□□□ 0.69
SDC1-203ENST00000403076 PTMAP06454 111 aaKnown RBP19.37■□□□□ 0.69
SDC1-203ENST00000403076 SLC11A1P49279 550 aa19.37■□□□□ 0.69
SDC1-203ENST00000403076 HTRA4P83105 476 aaPredicted RBP19.37■□□□□ 0.69
SDC1-203ENST00000403076 CCDC173Q0VFZ6 552 aa19.37■□□□□ 0.69
SDC1-203ENST00000403076 TBX2Q13207 712 aaPredicted RBP19.37■□□□□ 0.69
SDC1-203ENST00000403076 ENOSF1Q7L5Y1 443 aa19.37■□□□□ 0.69
SDC1-203ENST00000403076 FIBCD1Q8N539 461 aa19.37■□□□□ 0.69
SDC1-203ENST00000403076 C3orf58Q8NDZ4 430 aa19.37■□□□□ 0.69
SDC1-203ENST00000403076 KAT5Q92993 513 aa19.37■□□□□ 0.69
SDC1-203ENST00000403076 TTYH3Q9C0H2 523 aa19.37■□□□□ 0.69
SDC1-203ENST00000403076 CWH43Q9H720 699 aa19.37■□□□□ 0.69
SDC1-203ENST00000403076 A0A1W2PQJ5 194 aa19.36■□□□□ 0.69
SDC1-203ENST00000403076 NT5C1B-RDH14C9J2C7 533 aa19.36■□□□□ 0.69
SDC1-203ENST00000403076 AKR1B15C9JRZ8 316 aaPredicted RBP19.36■□□□□ 0.69
SDC1-203ENST00000403076 KIF4AO95239 1232 aa19.36■□□□□ 0.69
SDC1-203ENST00000403076 GALTP07902 379 aa19.36■□□□□ 0.69
SDC1-203ENST00000403076 PAX3P23760 479 aa19.36■□□□□ 0.69
SDC1-203ENST00000403076 IGFBP6P24592 240 aaPredicted RBP19.36■□□□□ 0.69
SDC1-203ENST00000403076 KRT9P35527 623 aa19.36■□□□□ 0.69
SDC1-203ENST00000403076 FXR1P51114 621 aaKnown RBP eCLIP19.36■□□□□ 0.69
SDC1-203ENST00000403076 BCAR1P56945 870 aa19.36■□□□□ 0.69
SDC1-203ENST00000403076 YWHAEP62258 255 aaKnown RBP19.36■□□□□ 0.69
SDC1-203ENST00000403076 DRAP1Q14919 205 aaPredicted RBP19.36■□□□□ 0.69
SDC1-203ENST00000403076 TSR1Q2NL82 804 aaKnown RBP19.36■□□□□ 0.69
SDC1-203ENST00000403076 KREMEN1Q96MU8 473 aa19.36■□□□□ 0.69
SDC1-203ENST00000403076 STK33Q9BYT3 514 aa19.36■□□□□ 0.69
SDC1-203ENST00000403076 AJAP1Q9UKB5 411 aaPredicted RBP19.36■□□□□ 0.69
SDC1-203ENST00000403076 MRPL42Q9Y6G3 142 aaKnown RBP19.36■□□□□ 0.69
SDC1-203ENST00000403076 SCN1AP35498 2009 aa19.36■□□□□ 0.69
SDC1-203ENST00000403076 CYB561D2O14569 222 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 WEE2P0C1S8 567 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 PBX3P40426 434 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 USP8P40818 1118 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 BRCC3P46736 316 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 ADKP55263 362 aaKnown RBP19.35■□□□□ 0.69
SDC1-203ENST00000403076 ZBED6P86452 979 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 GOLGA8FQ08AF8 430 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 GOLGA8DPQ0D2H9 430 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 CNGA4Q8IV77 575 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 FAXDC2Q96IV6 333 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 PDLIM2Q96JY6 352 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 SENP8Q96LD8 212 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 ZNF558Q96NG5 402 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 ARID3AQ99856 593 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 NAA15Q9BXJ9 866 aaKnown RBP19.35■□□□□ 0.69
SDC1-203ENST00000403076 CYP3A43Q9HB55 503 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 AAASQ9NRG9 546 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 GDAP2Q9NXN4 497 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 F8W810 466 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 RNF225M0QZC1 329 aaPredicted RBP19.35■□□□□ 0.69
SDC1-203ENST00000403076 TRAPPC3O43617 180 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 LAG3P18627 525 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 CD58P19256 250 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 STAT1P42224 750 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 ASPAP45381 313 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 RAP1GAPP47736 663 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 TIGD5Q53EQ6 642 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 PDXDC1Q6P996 788 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 KCNT2Q6UVM3 1135 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 CCDC186Q7Z3E2 898 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 APPL2Q8NEU8 664 aa19.35■□□□□ 0.69
SDC1-203ENST00000403076 BCO2Q9BYV7 579 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms