RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 KIF4AO95239 1232 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 DNAJB1P25685 340 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 ZNF276Q8N554 614 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 LNX1Q8TBB1 728 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-202ENST00000394943 C18orf25Q96B23 403 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-202ENST00000394943 SRRTQ9BXP5 876 aaKnown RBP7.56□□□□□ -1.2
LIMA1-202ENST00000394943 TRIM6Q9C030 488 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-202ENST00000394943 ABCB6Q9NP58 842 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 NGRNQ9NPE2 291 aaKnown RBP7.56□□□□□ -1.2
LIMA1-202ENST00000394943 NME7Q9Y5B8 376 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 CHD9Q3L8U1 2897 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 SF3B1O75533 1304 aaKnown RBP eCLIP7.56□□□□□ -1.26e-6■■■■■ 117.3
LIMA1-202ENST00000394943 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-202ENST00000394943 VNN2O95498 520 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 AFPP02771 609 aaKnown RBP7.56□□□□□ -1.2
LIMA1-202ENST00000394943 CDC25BP30305 580 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 PBX2P40425 430 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 CLCNKBP51801 687 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 PTPN14Q15678 1187 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 SEMA4DQ92854 862 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 NKX2-4Q9H2Z4 354 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 NENFQ9UMX5 172 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 NOTCH4Q99466 2003 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 KCNJ18B7U540 433 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 NOL4O94818 638 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 CST3P01034 146 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-202ENST00000394943 ALDH2P05091 517 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 HNRNPH3P31942 346 aaKnown RBP7.56□□□□□ -1.2
LIMA1-202ENST00000394943 GSCP56915 257 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-202ENST00000394943 RAB33AQ14088 237 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 KCNJ12Q14500 433 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 KRT31Q15323 416 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 THNSL1Q8IYQ7 743 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 WHAMMQ8TF30 809 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 KIF12Q96FN5 646 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 PCIF1Q9H4Z3 704 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 APOBEC3GQ9HC16 384 aaKnown RBP7.56□□□□□ -1.2
LIMA1-202ENST00000394943 NFE2L3Q9Y4A8 694 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 C2orf16Q68DN1 1984 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 SYCE3A1L190 88 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 OR6C75A6NL08 312 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 NCK2O43639 380 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 FGF18O76093 207 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 MAGEA11P43364 429 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 TAF6P49848 677 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 CHMP4BP1P59074 171 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 KCNH2Q12809 1159 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 TBX2Q13207 712 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-202ENST00000394943 BTG3Q14201 252 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-202ENST00000394943 DUSP6Q16828 381 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 PKDCCQ504Y2 493 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 SCARA3Q6AZY7 606 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 FUT10Q6P4F1 479 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 TRMT1LQ7Z2T5 733 aaKnown RBP7.55□□□□□ -1.2
LIMA1-202ENST00000394943 TMEM173Q86WV6 379 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-202ENST00000394943 FBXL13Q8NEE6 735 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 ACBD6Q9BR61 282 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 DNAJC25Q9H1X3 360 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 TSPY26PQ9H489 355 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 ZHX3Q9H4I2 956 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 CSNK1G1Q9HCP0 422 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 RAB20Q9NX57 234 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 PCDHB12Q9Y5F1 795 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 TRANK1O15050 2925 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 COL4A3Q01955 1670 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 FAM92AA1XBS5 289 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 C2orf71A6NGG8 1288 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 CA3P07451 260 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 CYP2J2P51589 502 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 TIGD5Q53EQ6 642 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 ARHGAP17Q68EM7 881 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 CDR2LQ86X02 465 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-202ENST00000394943 DRC7Q8IY82 874 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 SYN2Q92777 582 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-202ENST00000394943 RPS6KC1Q96S38 1066 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 YME1L1Q96TA2 773 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 MTMR12Q9C0I1 747 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 NDST4Q9H3R1 872 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 SAMSN1Q9NSI8 373 aaKnown RBP7.55□□□□□ -1.2
LIMA1-202ENST00000394943 FAN1Q9Y2M0 1017 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 PPEF2O14830 753 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 TNNC2P02585 160 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 TBXAS1P24557 533 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-202ENST00000394943 CDH5P33151 784 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-202ENST00000394943 ZNF165P49910 485 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 COPB1P53618 953 aaKnown RBP7.55□□□□□ -1.2
LIMA1-202ENST00000394943 EPHA5P54756 1037 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 SOWAHAQ2M3V2 549 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 TPGS2Q68CL5 300 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 MRPL43Q8N983 215 aaKnown RBP7.55□□□□□ -1.2
LIMA1-202ENST00000394943 FBXO22Q8NEZ5 403 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 PAAF1Q9BRP4 392 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 TUBGCP2Q9BSJ2 902 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 PNPLA8Q9NP80 782 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 FANCLQ9NW38 375 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 PARP2Q9UGN5 583 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 MTCH2Q9Y6C9 303 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 KIAA1549LQ6ZVL6 1849 aa7.55□□□□□ -1.2
LIMA1-202ENST00000394943 MKI67P46013 3256 aaKnown RBP7.54□□□□□ -1.2
LIMA1-202ENST00000394943 KPNA7A9QM74 516 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms