RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 FAM71AQ8IYT1 594 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 ATP8B4Q8TF62 1192 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 FAM81BQ96LP2 452 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 MFSD14AQ96MC6 490 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 MRPL4Q9BYD3 311 aaKnown RBP11.5□□□□□ -0.57
NEDD9-201ENST00000379433 C17orf75Q9HAS0 396 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 ERVK-5Q9HDB9 667 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 POLIQ9UNA4 740 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 TMEM253P0C7T8 217 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 TNNC1P63316 161 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 MOGSQ13724 837 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 KIF22Q14807 665 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 C10orf76Q5T2E6 689 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 CYP4A22Q5TCH4 519 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 ATF7IP2Q5U623 682 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 CCDC25Q86WR0 208 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 TSEN2Q8NCE0 465 aaKnown RBP11.5□□□□□ -0.57
NEDD9-201ENST00000379433 SHC3Q92529 594 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 MUC3BQ9H195 1237 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 ARIH1Q9Y4X5 557 aaPredicted RBP11.5□□□□□ -0.57
NEDD9-201ENST00000379433 RLFQ13129 1914 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 PI4K2BG5E9Z4 385 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 MAFO75444 373 aaPredicted RBP11.5□□□□□ -0.57
NEDD9-201ENST00000379433 LGALS2P05162 132 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 GARTP22102 1010 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 TPP2P29144 1249 aaPredicted RBP11.5□□□□□ -0.57
NEDD9-201ENST00000379433 MAPK4P31152 587 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 ICAM3P32942 547 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 SH3BGRP55822 239 aaPredicted RBP11.5□□□□□ -0.57
NEDD9-201ENST00000379433 CCNA1P78396 465 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 TOMM20Q15388 145 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 TERF2Q15554 542 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 NFIL3Q16649 462 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 AMHR2Q16671 573 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 DCAF12L1Q5VU92 463 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 C2orf69Q8N8R5 385 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 SLC17A8Q8NDX2 589 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 CCDC26Q8TAB7 109 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 C1orf54Q8WWF1 131 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 CASKIN2Q8WXE0 1202 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 RPGRIP1Q96KN7 1286 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.5□□□□□ -0.57
NEDD9-201ENST00000379433 SFMBT1Q9UHJ3 866 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 TSKSQ9UJT2 592 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 NOCTQ9UK39 431 aaKnown RBP11.5□□□□□ -0.57
NEDD9-201ENST00000379433 PNMA3Q9UL41 463 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 GTF2H1P32780 548 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 PSMC4P43686 418 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 BEX3Q00994 111 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 SYCE1Q8N0S2 351 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 SH2D3CQ8N5H7 860 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 RBBP8NLQ8NC74 664 aaPredicted RBP11.49□□□□□ -0.57
NEDD9-201ENST00000379433 UBLCP1Q8WVY7 318 aaPredicted RBP11.49□□□□□ -0.57
NEDD9-201ENST00000379433 ATG4AQ8WYN0 398 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 HAUS1Q96CS2 278 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 C18orf8Q96DM3 657 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 PTPN18Q99952 460 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 ST6GALNAC4Q9H4F1 302 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 SMARCAD1Q9H4L7 1026 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 FBXL5Q9UKA1 691 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 TMCC3Q9ULS5 477 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 KCNH4Q9UQ05 1017 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 A0A0B4J269 797 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 H3BRB1 525 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 RNF40O75150 1001 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 RTN2O75298 545 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 ATG7O95352 703 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 VDRP11473 427 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 EDNRBP24530 442 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 ATP1A2P50993 1020 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 ZNF157P51786 506 aaPredicted RBP11.49□□□□□ -0.57
NEDD9-201ENST00000379433 MTM1Q13496 603 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 ZACNQ401N2 412 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 TTC31Q49AM3 519 aaPredicted RBP11.49□□□□□ -0.57
NEDD9-201ENST00000379433 GPR142Q7Z601 462 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.49□□□□□ -0.575e-7■■□□□ 12.5
NEDD9-201ENST00000379433 TUT1Q9H6E5 874 aaKnown RBP11.49□□□□□ -0.57
NEDD9-201ENST00000379433 FAM204AQ9H8W3 233 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 ERAP1Q9NZ08 941 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 SNX24Q9Y343 169 aa11.49□□□□□ -0.57
NEDD9-201ENST00000379433 ZBTB42B2RXF5 422 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 MSCO60682 206 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 TOM1L1O75674 476 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 AP1G2O75843 785 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 PYGMP11217 842 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 GPC3P51654 580 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 CDR2Q01850 454 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 CUL2Q13617 745 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 CCL14Q16627 93 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 SLFN12LQ6IEE8 588 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 C12orf56Q8IXR9 622 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 IFT20Q8IY31 132 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 OLIG1Q8TAK6 271 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 SH3GL3Q99963 347 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 MROH8Q9H579 483 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 ADAM22Q9P0K1 906 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 ADAM21Q9UKJ8 722 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 MYCP01106 439 aaPredicted RBP11.48□□□□□ -0.57
NEDD9-201ENST00000379433 CETPP11597 493 aa11.48□□□□□ -0.57
NEDD9-201ENST00000379433 ZNF200P98182 395 aaPredicted RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms