RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 MS4A14Q96JA4 679 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 CACNA2D2Q9NY47 1150 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 WARS2Q9UGM6 360 aaKnown RBP16.35■□□□□ 0.21
PTPRF-201ENST00000359947 TULP4Q9NRJ4 1543 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 SUPT3HB4E1H0 165 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 SPTLC1O15269 473 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 SUPT3HO75486 399 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 FAM200BP0CF97 657 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 RCAN1P53805 252 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 NUP93Q8N1F7 819 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 AGBL3Q8NEM8 1001 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 SLC35G2Q8TBE7 412 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 EML4Q9HC35 981 aaKnown RBP16.35■□□□□ 0.21
PTPRF-201ENST00000359947 LAMC1P11047 1609 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 HLA-DRAP01903 254 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 GTF2H1P32780 548 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 CENPAP49450 140 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 PDIA5Q14554 519 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 C1orf146Q5VVC0 180 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 RNF103-CHMP3A0A140T963 221 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 ACSF2Q96CM8 615 aaPredicted RBP16.35■□□□□ 0.21
PTPRF-201ENST00000359947 METTL5Q9NRN9 209 aaKnown RBP16.35■□□□□ 0.21
PTPRF-201ENST00000359947 DPP3Q9NY33 737 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 DCTN3O75935 186 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 FMO5P49326 533 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 CLCN3P51790 818 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 TRIML2Q8N7C3 387 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 PRMT7Q9NVM4 692 aaPredicted RBP16.35■□□□□ 0.21
PTPRF-201ENST00000359947 POLLQ9UGP5 575 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 GPR182O15218 404 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 CKMP06732 381 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 TMEM132BQ14DG7 1078 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 HSP90AA5PQ58FG0 334 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 GPAT2Q6NUI2 795 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 SGMS1Q86VZ5 419 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 PRKCQQ04759 706 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 AARS2Q5JTZ9 985 aaKnown RBP16.34■□□□□ 0.21
PTPRF-201ENST00000359947 HIBCHQ6NVY1 386 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-201ENST00000359947 CARNMT1Q8N4J0 409 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 TIPINQ9BVW5 301 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 TRIM4Q9C037 500 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 USP42Q9H9J4 1324 aaKnown RBP16.34■□□□□ 0.21
PTPRF-201ENST00000359947 C5orf58C9J3I9 102 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 CSDE1O75534 798 aaKnown RBP16.34■□□□□ 0.21
PTPRF-201ENST00000359947 IGFBP4P22692 258 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 MZF1P28698 734 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-201ENST00000359947 PBLDP30039 288 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-201ENST00000359947 RFX3P48380 749 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 CLCN6P51797 869 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 P3H1Q32P28 736 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 NBPF12Q5TAG4 269 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-201ENST00000359947 ARRDC4Q8NCT1 418 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 CATSPERBQ9H7T0 1116 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 AMACRQ9UHK6 382 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 XPO7Q9UIA9 1087 aaKnown RBP16.34■□□□□ 0.21
PTPRF-201ENST00000359947 RFFLQ8WZ73 363 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 THEGQ9P2T0 379 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 LUC7L3O95232 432 aaKnown RBP16.34■□□□□ 0.21
PTPRF-201ENST00000359947 C20orf96Q9NUD7 363 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-201ENST00000359947 NPM3O75607 178 aaKnown RBP16.34■□□□□ 0.21
PTPRF-201ENST00000359947 BRAFP15056 766 aa16.34■□□□□ 0.21
PTPRF-201ENST00000359947 KRT72Q14CN4 511 aa16.33■□□□□ 0.21
PTPRF-201ENST00000359947 SCFD1Q8WVM8 642 aa16.33■□□□□ 0.21
PTPRF-201ENST00000359947 PLA2G12BQ9BX93 195 aa16.33■□□□□ 0.21
PTPRF-201ENST00000359947 TRIM9Q9C026 710 aa16.33■□□□□ 0.21
PTPRF-201ENST00000359947 SENP2Q9HC62 589 aa16.33■□□□□ 0.21
PTPRF-201ENST00000359947 TMEM161AQ9NX61 479 aa16.33■□□□□ 0.21
PTPRF-201ENST00000359947 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.33■□□□□ 0.21
PTPRF-201ENST00000359947 SPHKAPQ2M3C7 1700 aa16.33■□□□□ 0.21
PTPRF-201ENST00000359947 MYMKA6NI61 221 aa16.33■□□□□ 0.21
PTPRF-201ENST00000359947 CHRM3P20309 590 aa16.33■□□□□ 0.21
PTPRF-201ENST00000359947 FLOT2Q14254 428 aa16.33■□□□□ 0.21
PTPRF-201ENST00000359947 TGS1Q96RS0 853 aaKnown RBP16.33■□□□□ 0.21
PTPRF-201ENST00000359947 CINPQ9BW66 212 aaPredicted RBP16.33■□□□□ 0.21
PTPRF-201ENST00000359947 IGDCC4Q8TDY8 1250 aa16.33■□□□□ 0.2
PTPRF-201ENST00000359947 FZD1Q9UP38 647 aa16.33■□□□□ 0.2
PTPRF-201ENST00000359947 TAF6P49848 677 aa16.33■□□□□ 0.2
PTPRF-201ENST00000359947 USP10Q14694 798 aaKnown RBP16.33■□□□□ 0.2
PTPRF-201ENST00000359947 PDXDC1Q6P996 788 aa16.33■□□□□ 0.2
PTPRF-201ENST00000359947 BARGINQ6ZT62 677 aa16.33■□□□□ 0.2
PTPRF-201ENST00000359947 RNPC3Q96LT9 517 aaKnown RBP16.33■□□□□ 0.2
PTPRF-201ENST00000359947 PHF20Q9BVI0 1012 aa16.33■□□□□ 0.2
PTPRF-201ENST00000359947 C6orf10Q5SRN2 563 aa16.33■□□□□ 0.2
PTPRF-201ENST00000359947 OTUB1Q96FW1 271 aaPredicted RBP16.33■□□□□ 0.2
PTPRF-201ENST00000359947 MTFR1LQ9H019 292 aa16.33■□□□□ 0.2
PTPRF-201ENST00000359947 STX18Q9P2W9 335 aaKnown RBP16.33■□□□□ 0.2
PTPRF-201ENST00000359947 TUBE1Q9UJT0 475 aa16.33■□□□□ 0.2
PTPRF-201ENST00000359947 VCAM1P19320 739 aa16.33■□□□□ 0.2
PTPRF-201ENST00000359947 TMC7Q7Z402 723 aa16.33■□□□□ 0.2
PTPRF-201ENST00000359947 TRIM28Q13263 835 aaKnown RBP16.33■□□□□ 0.2
PTPRF-201ENST00000359947 AKT1S1Q96B36 256 aa16.33■□□□□ 0.2
PTPRF-201ENST00000359947 AURKCQ9UQB9 309 aa16.33■□□□□ 0.2
PTPRF-201ENST00000359947 ASS1P00966 412 aaKnown RBP16.32■□□□□ 0.2
PTPRF-201ENST00000359947 LMNAP02545 664 aaKnown RBP16.32■□□□□ 0.2
PTPRF-201ENST00000359947 RCOR2Q8IZ40 523 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 SHCBP1Q8NEM2 672 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 CASTOR2A6NHX0 329 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 ZNF263O14978 683 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 LZTS3O60299 673 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-201ENST00000359947 SOAT1P35610 550 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms