RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 KIF22Q14807 665 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 AADACL2Q6P093 401 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 RBM46Q8TBY0 533 aaKnown RBP15.53■□□□□ 0.08
TCOF1-201ENST00000323668 DNAJC18Q9H819 358 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 NUDT17P0C025 328 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 KRT4P19013 534 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 PRKCEQ02156 737 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 CRYMQ14894 314 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 DBN1Q16643 649 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 WDR72Q3MJ13 1102 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 HSP90AA5PQ58FG0 334 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 ZNF572Q7Z3I7 529 aaPredicted RBP15.53■□□□□ 0.08
TCOF1-201ENST00000323668 CCT6BQ92526 530 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 C2orf40Q9H1Z8 148 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 RXFP1Q9HBX9 757 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 ROBO3Q96MS0 1386 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 GPC4O75487 556 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 TARSP26639 723 aaKnown RBP15.52■□□□□ 0.08
TCOF1-201ENST00000323668 CHRNA5P30532 468 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 CUL2Q13617 745 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 GRAMD1BQ3KR37 738 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 PRELID2Q8N945 189 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 RDM1Q8NG50 284 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 TARS2Q9BW92 718 aaKnown RBP15.52■□□□□ 0.08
TCOF1-201ENST00000323668 XPO7Q9UIA9 1087 aaKnown RBP15.52■□□□□ 0.08
TCOF1-201ENST00000323668 SSX2IPQ9Y2D8 614 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 CCDC195A0A1B0GUA6 201 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 DNAJC8O75937 253 aaPredicted RBP15.52■□□□□ 0.08
TCOF1-201ENST00000323668 RBP3P10745 1247 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 KRT10P13645 584 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 GEMIN4P57678 1058 aaKnown RBP15.52■□□□□ 0.08
TCOF1-201ENST00000323668 KLC1Q07866 573 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 BMT2Q1RMZ1 405 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 CLEC16AQ2KHT3 1053 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 SGSM1Q2NKQ1 1148 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 NOP9Q86U38 636 aaKnown RBP15.52■□□□□ 0.08
TCOF1-201ENST00000323668 SMYD2Q9NRG4 433 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 ZNF277Q9NRM2 450 aaPredicted RBP15.52■□□□□ 0.08
TCOF1-201ENST00000323668 PCYOX1Q9UHG3 505 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 CHMP2BQ9UQN3 213 aa15.52■□□□□ 0.08
TCOF1-201ENST00000323668 CASQ2O14958 399 aaPredicted RBP15.52■□□□□ 0.07
TCOF1-201ENST00000323668 AP2B1P63010 937 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 ZNF200P98182 395 aaPredicted RBP15.52■□□□□ 0.07
TCOF1-201ENST00000323668 SUPT20HL1Q3ZLR7 823 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 C1orf228Q6PIY5 440 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 ZFPM1Q8IX07 1006 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 ETNPPLQ8TBG4 499 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 FAM96AQ9H5X1 160 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 SMYD3Q9H7B4 428 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 TOPORSQ9NS56 1045 aaPredicted RBP15.52■□□□□ 0.07
TCOF1-201ENST00000323668 LRRC4BQ9NT99 713 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 NCANO14594 1321 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 AFF2P51816 1311 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 GMNNO75496 209 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 EMC2Q15006 297 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 EXD1Q8NHP7 514 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 DTX3LQ8TDB6 740 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 WRNIP1Q96S55 665 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 PPP1R16BQ96T49 567 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 APOL6Q9BWW8 343 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 RAB6BQ9NRW1 208 aa15.52■□□□□ 0.07
TCOF1-201ENST00000323668 BCL9LQ86UU0 1499 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 M0R2N6 131 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 SMAPO00193 183 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 TGFB1I1O43294 461 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 GARTP22102 1010 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 TPD52P55327 224 aaPredicted RBP15.51■□□□□ 0.07
TCOF1-201ENST00000323668 PPP3CAQ08209 521 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 SWT1Q5T5J6 900 aaKnown RBP15.51■□□□□ 0.07
TCOF1-201ENST00000323668 RFX8Q6ZV50 586 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 ST13P4Q8IZP2 240 aaPredicted RBP15.51■□□□□ 0.07
TCOF1-201ENST00000323668 SNX25Q9H3E2 840 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 NDE1Q9NXR1 346 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 FBXO40Q9UH90 709 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 MID2Q9UJV3 735 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 G3BP2Q9UN86 482 aaKnown RBP15.51■□□□□ 0.07
TCOF1-201ENST00000323668 GIPC1O14908 333 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 DRD4P21917 467 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 FLT3P36888 993 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 EPHB1P54762 984 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 ASTE1Q2TB18 679 aaPredicted RBP15.51■□□□□ 0.07
TCOF1-201ENST00000323668 MMEL1Q495T6 779 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 GPAT2Q6NUI2 795 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 PPIL6Q8IXY8 311 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 C4orf19Q8IY42 314 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 RASGEF1CQ8N431 466 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 RNF149Q8NC42 400 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 EPS8L1Q8TE68 723 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 ZKSCAN4Q969J2 545 aaPredicted RBP15.51■□□□□ 0.07
TCOF1-201ENST00000323668 ZNF668Q96K58 619 aaPredicted RBP15.51■□□□□ 0.07
TCOF1-201ENST00000323668 HAO1Q9UJM8 370 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 MTO1Q9Y2Z2 717 aaKnown RBP15.51■□□□□ 0.07
TCOF1-201ENST00000323668 ZBTB12Q9Y330 459 aaPredicted RBP15.51■□□□□ 0.07
TCOF1-201ENST00000323668 XPOTO43592 962 aaKnown RBP15.51■□□□□ 0.07
TCOF1-201ENST00000323668 SNHG28P0DPA3 235 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 MTMR2Q13614 643 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 XRRA1Q6P2D8 792 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 MCOLN2Q8IZK6 566 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 DNAJC9Q8WXX5 260 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 KAT5Q92993 513 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms