RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 INPP5AQ14642 412 aa20.08■□□□□ 0.8
UPF1-201ENST00000262803 PDK1Q15118 436 aa20.08■□□□□ 0.8
UPF1-201ENST00000262803 DGKDQ16760 1214 aa20.08■□□□□ 0.8
UPF1-201ENST00000262803 FRMD8P1Q9BZ68 369 aaPredicted RBP20.08■□□□□ 0.8
UPF1-201ENST00000262803 PSD3Q9NYI0 1048 aa20.08■□□□□ 0.8
UPF1-201ENST00000262803 DLC1Q96QB1 1528 aa20.08■□□□□ 0.8
UPF1-201ENST00000262803 PTPRMP28827 1452 aa20.08■□□□□ 0.8
UPF1-201ENST00000262803 NR3C2P08235 984 aa20.08■□□□□ 0.8
UPF1-201ENST00000262803 PDHBP11177 359 aa20.08■□□□□ 0.8
UPF1-201ENST00000262803 SKIV2LQ15477 1246 aaKnown RBP20.08■□□□□ 0.8
UPF1-201ENST00000262803 HABP4Q5JVS0 413 aaKnown RBP20.08■□□□□ 0.8
UPF1-201ENST00000262803 PARP9Q8IXQ6 854 aa20.08■□□□□ 0.8
UPF1-201ENST00000262803 SLC30A5Q8TAD4 765 aa20.08■□□□□ 0.8
UPF1-201ENST00000262803 H7C4K7 107 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 DIAPH2O60879 1101 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 DDX53Q86TM3 631 aaKnown RBP20.07■□□□□ 0.8
UPF1-201ENST00000262803 ARHGEF26Q96DR7 871 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 MOV10L1Q9BXT6 1211 aaKnown RBP20.07■□□□□ 0.8
UPF1-201ENST00000262803 PRDM5Q9NQX1 630 aaPredicted RBP20.07■□□□□ 0.8
UPF1-201ENST00000262803 PPP1R3GB7ZBB8 358 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 MYBP10242 640 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 WDR72Q3MJ13 1102 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 NOA1Q8NC60 698 aaKnown RBP20.07■□□□□ 0.8
UPF1-201ENST00000262803 SRPK1Q96SB4 655 aaKnown RBP20.07■□□□□ 0.8
UPF1-201ENST00000262803 EPN3Q9H201 632 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 CNTNAP4Q9C0A0 1308 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 IGSF9BQ9UPX0 1349 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 A0A1W2PQJ5 194 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 MEFVO15553 781 aaPredicted RBP20.07■□□□□ 0.8
UPF1-201ENST00000262803 PHF2O75151 1096 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 ZNF157P51786 506 aaPredicted RBP20.07■□□□□ 0.8
UPF1-201ENST00000262803 FLOT2Q14254 428 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 NUDT12Q9BQG2 462 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 SLC4A7Q9Y6M7 1214 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 ANKRD13AQ8IZ07 590 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 FAM161BQ96MY7 647 aa20.07■□□□□ 0.8
UPF1-201ENST00000262803 ITIH2P19823 946 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 PSMA3P25788 255 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 KLK7P49862 253 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 FCGRTP55899 365 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 ILF2Q12905 390 aaKnown RBP20.06■□□□□ 0.8
UPF1-201ENST00000262803 PDAP1Q13442 181 aaKnown RBP20.06■□□□□ 0.8
UPF1-201ENST00000262803 NT5C1AQ9BXI3 368 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 RNF180Q86T96 592 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 MAD2L2Q9UI95 211 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 RNF103-CHMP3A0A140T963 221 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 TCP11X1B4DZS4 312 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 NCOA4Q13772 614 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 BAATQ14032 418 aaPredicted RBP20.06■□□□□ 0.8
UPF1-201ENST00000262803 NOTUMQ6P988 496 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 LRIG3Q6UXM1 1119 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 SRLQ86TD4 932 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 CCT8L2Q96SF2 557 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 PAK5Q9P286 719 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 SUFUQ9UMX1 484 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 DDIASQ8IXT1 998 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 C5orf58C9J3I9 102 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 EIF3HO15372 352 aaKnown RBP eCLIP20.06■□□□□ 0.83e-6■■□□□ 12.9
UPF1-201ENST00000262803 EGFRP00533 1210 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 TSC22D3Q99576 134 aa20.06■□□□□ 0.8
UPF1-201ENST00000262803 CEP152O94986 1710 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 RARS2Q5T160 578 aaKnown RBP20.05■□□□□ 0.8
UPF1-201ENST00000262803 SPATA21Q7Z572 469 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 TRABDQ9H4I3 376 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 RSAD1Q9HA92 442 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 KLHL11Q9NVR0 708 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 CPS1P31327 1500 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 EEF2KO00418 725 aaKnown RBP20.05■□□□□ 0.8
UPF1-201ENST00000262803 PRKCQQ04759 706 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 ZNF473Q8WTR7 871 aaKnown RBP20.05■□□□□ 0.8
UPF1-201ENST00000262803 COLEC11Q9BWP8 271 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 GIMAP4Q9NUV9 329 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 TMEM51Q9NW97 253 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.05■□□□□ 0.8
UPF1-201ENST00000262803 DYNC1LI2O43237 492 aaPredicted RBP20.05■□□□□ 0.8
UPF1-201ENST00000262803 EXTL3O43909 919 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 GFAPP14136 432 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 PRMT1Q99873 361 aaKnown RBP20.05■□□□□ 0.8
UPF1-201ENST00000262803 MXRA8Q9BRK3 442 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 TMEM8AQ9HCN3 771 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 KLC4Q9NSK0 619 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 NDUFS3O75489 264 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 ASMTLO95671 621 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 ANKMY2Q8IV38 441 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 TNIP2Q8NFZ5 429 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 ARHGEF38Q9NXL2 777 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 SNX9Q9Y5X1 595 aa20.05■□□□□ 0.8
UPF1-201ENST00000262803 PRRG1O14668 218 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 RAD51CO43502 376 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 TLR2O60603 784 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 PDHA1P08559 390 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 C6orf222P0C671 652 aaPredicted RBP20.04■□□□□ 0.8
UPF1-201ENST00000262803 PDGFRAP16234 1089 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 PTK6Q13882 451 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 ACBD5Q5T8D3 534 aaPredicted RBP20.04■□□□□ 0.8
UPF1-201ENST00000262803 LRRC8BQ6P9F7 803 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 ANGPT2O15123 496 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 CDH16O75309 829 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 GTF2A2P52657 109 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 MTA1Q13330 715 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms