RNA–Protein interactions for RNA: ENST00000603837.1

LINC01109-201, Transcript of long intergenic non-protein coding RNA 1109, humanhuman

BASIC

Gene LINC01109, Length 3,081 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01109-201ENST00000603837 OXER1Q8TDS5 423 aa6.33□□□□□ -1.4
LINC01109-201ENST00000603837 PTCD2Q8WV60 388 aaKnown RBP6.33□□□□□ -1.4
LINC01109-201ENST00000603837 DPYSL4O14531 572 aa6.33□□□□□ -1.4
LINC01109-201ENST00000603837 TBC1D12O60347 775 aa6.33□□□□□ -1.4
LINC01109-201ENST00000603837 ANAPC15P60006 121 aa6.33□□□□□ -1.4
LINC01109-201ENST00000603837 FOXD4L6Q3SYB3 417 aaPredicted RBP6.32□□□□□ -1.4
LINC01109-201ENST00000603837 FOXD4L3Q6VB84 417 aaPredicted RBP6.32□□□□□ -1.4
LINC01109-201ENST00000603837 IPO4Q8TEX9 1081 aaKnown RBP6.32□□□□□ -1.4
LINC01109-201ENST00000603837 CC2D2BQ6DHV5 1058 aa6.31□□□□□ -1.4
LINC01109-201ENST00000603837 ARIH1Q9Y4X5 557 aaPredicted RBP6.31□□□□□ -1.4
LINC01109-201ENST00000603837 PCDHGA4Q9Y5G9 962 aa6.31□□□□□ -1.4
LINC01109-201ENST00000603837 CCDC82Q8N4S0 544 aa6.31□□□□□ -1.4
LINC01109-201ENST00000603837 ZSWIM6Q9HCJ5 1215 aa6.31□□□□□ -1.4
LINC01109-201ENST00000603837 MRC2Q9UBG0 1479 aa6.3□□□□□ -1.4
LINC01109-201ENST00000603837 KIF21AQ7Z4S6 1674 aa6.3□□□□□ -1.4
LINC01109-201ENST00000603837 GZF1Q9H116 711 aaPredicted RBP6.3□□□□□ -1.4
LINC01109-201ENST00000603837 WASHC2CQ9Y4E1 1318 aa6.3□□□□□ -1.4
LINC01109-201ENST00000603837 PTMSP20962 102 aa6.3□□□□□ -1.4
LINC01109-201ENST00000603837 HSP90AA2PQ14568 343 aaPredicted RBP6.3□□□□□ -1.4
LINC01109-201ENST00000603837 ARSIQ5FYB1 569 aa6.3□□□□□ -1.4
LINC01109-201ENST00000603837 ABCC8Q09428 1581 aa6.3□□□□□ -1.4
LINC01109-201ENST00000603837 WASHC2AQ641Q2 1341 aa6.3□□□□□ -1.4
LINC01109-201ENST00000603837 TOP2AP11388 1531 aaKnown RBP6.3□□□□□ -1.4
LINC01109-201ENST00000603837 TMCO4Q5TGY1 634 aa6.29□□□□□ -1.4
LINC01109-201ENST00000603837 GPR153Q6NV75 609 aa6.29□□□□□ -1.4
LINC01109-201ENST00000603837 BRD1O95696 1058 aa6.29□□□□□ -1.4
LINC01109-201ENST00000603837 FTSJ3Q8IY81 847 aaKnown RBP6.29□□□□□ -1.4
LINC01109-201ENST00000603837 RRP9O43818 475 aaKnown RBP6.29□□□□□ -1.4
LINC01109-201ENST00000603837 GPATCH11Q8N954 259 aa6.29□□□□□ -1.4
LINC01109-201ENST00000603837 FAM163AQ96GL9 167 aaPredicted RBP6.29□□□□□ -1.4
LINC01109-201ENST00000603837 KHSRPQ92945 711 aaKnown RBP eCLIP6.28□□□□□ -1.4
LINC01109-201ENST00000603837 ERCC6Q03468 1493 aa6.28□□□□□ -1.4
LINC01109-201ENST00000603837 SMARCA5O60264 1052 aaPredicted RBP6.28□□□□□ -1.4
LINC01109-201ENST00000603837 EVI5O60447 810 aa6.28□□□□□ -1.4
LINC01109-201ENST00000603837 NEFMP07197 916 aa6.28□□□□□ -1.4
LINC01109-201ENST00000603837 NUDT7P0C024 238 aa6.28□□□□□ -1.4
LINC01109-201ENST00000603837 ST18O60284 1047 aa6.27□□□□□ -1.41
LINC01109-201ENST00000603837 PDIA6Q15084 440 aa6.27□□□□□ -1.41
LINC01109-201ENST00000603837 SPDYE16A6NNV3 312 aaPredicted RBP6.27□□□□□ -1.41
LINC01109-201ENST00000603837 FAM43AQ8N2R8 423 aa6.27□□□□□ -1.41
LINC01109-201ENST00000603837 WRNQ14191 1432 aaPredicted RBP eCLIP6.27□□□□□ -1.41
LINC01109-201ENST00000603837 HOXB1P14653 301 aaPredicted RBP6.27□□□□□ -1.41
LINC01109-201ENST00000603837 FAM193AP78312 1265 aa6.27□□□□□ -1.41
LINC01109-201ENST00000603837 CDCA8Q53HL2 280 aa6.27□□□□□ -1.41
LINC01109-201ENST00000603837 SGSM3Q96HU1 749 aa6.26□□□□□ -1.41
LINC01109-201ENST00000603837 E9PSI1 815 aa6.25□□□□□ -1.41
LINC01109-201ENST00000603837 SEMA3EO15041 775 aa6.25□□□□□ -1.41
LINC01109-201ENST00000603837 GRIPAP1Q4V328 841 aa6.25□□□□□ -1.41
LINC01109-201ENST00000603837 KAT6BQ8WYB5 2073 aa6.25□□□□□ -1.41
LINC01109-201ENST00000603837 GTF2E1P29083 439 aaPredicted RBP6.25□□□□□ -1.41
LINC01109-201ENST00000603837 KDM4FA0A1W2PPD8 638 aa6.24□□□□□ -1.41
LINC01109-201ENST00000603837 LAS1LQ9Y4W2 734 aaKnown RBP6.24□□□□□ -1.41
LINC01109-201ENST00000603837 CCDC88BA6NC98 1476 aa6.24□□□□□ -1.41
LINC01109-201ENST00000603837 HSP90AA1P07900 732 aaKnown RBP6.24□□□□□ -1.41
LINC01109-201ENST00000603837 MARVELD3Q96A59 401 aa6.23□□□□□ -1.41
LINC01109-201ENST00000603837 ANP32AP39687 249 aaKnown RBP6.23□□□□□ -1.41
LINC01109-201ENST00000603837 CFTRP13569 1480 aa6.23□□□□□ -1.41
LINC01109-201ENST00000603837 CADPSQ9ULU8 1353 aa6.22□□□□□ -1.41
LINC01109-201ENST00000603837 LOC102724159A0A0B4J2E5 919 aa6.22□□□□□ -1.41
LINC01109-201ENST00000603837 PWP2Q15269 919 aaKnown RBP6.22□□□□□ -1.41
LINC01109-201ENST00000603837 TMTC2Q8N394 836 aa6.22□□□□□ -1.41
LINC01109-201ENST00000603837 DDX12PQ92771 950 aa6.22□□□□□ -1.41
LINC01109-201ENST00000603837 SLC24A3Q9HC58 644 aa6.22□□□□□ -1.41
LINC01109-201ENST00000603837 IPO9Q96P70 1041 aaKnown RBP6.22□□□□□ -1.41
LINC01109-201ENST00000603837 DNAJC2Q99543 621 aaKnown RBP6.22□□□□□ -1.41
LINC01109-201ENST00000603837 GPBP1L1Q9HC44 474 aaPredicted RBP6.22□□□□□ -1.41
LINC01109-201ENST00000603837 LHX6Q9UPM6 363 aa6.22□□□□□ -1.41
LINC01109-201ENST00000603837 GRXCR2A6NFK2 248 aa6.22□□□□□ -1.41
LINC01109-201ENST00000603837 EMP3P54852 163 aa6.22□□□□□ -1.41
LINC01109-201ENST00000603837 PLEKHD1A6NEE1 506 aa6.21□□□□□ -1.42
LINC01109-201ENST00000603837 MLLT3P42568 568 aaPredicted RBP6.21□□□□□ -1.42
LINC01109-201ENST00000603837 PTGER2P43116 358 aa6.21□□□□□ -1.42
LINC01109-201ENST00000603837 LCE2DQ5TA82 110 aaPredicted RBP6.21□□□□□ -1.42
LINC01109-201ENST00000603837 TESPA1A2RU30 521 aaPredicted RBP6.2□□□□□ -1.42
LINC01109-201ENST00000603837 CANXP27824 592 aaKnown RBP6.2□□□□□ -1.42
LINC01109-201ENST00000603837 CALD1Q05682 793 aaKnown RBP6.2□□□□□ -1.42
LINC01109-201ENST00000603837 PRDM4Q9UKN5 801 aa6.2□□□□□ -1.42
LINC01109-201ENST00000603837 ERBB3P21860 1342 aa6.2□□□□□ -1.42
LINC01109-201ENST00000603837 PTMAP06454 111 aaKnown RBP6.19□□□□□ -1.42
LINC01109-201ENST00000603837 RGS3P49796 1198 aa6.19□□□□□ -1.42
LINC01109-201ENST00000603837 LMOD2Q6P5Q4 547 aa6.19□□□□□ -1.42
LINC01109-201ENST00000603837 NOL8Q76FK4 1167 aaKnown RBP6.19□□□□□ -1.42
LINC01109-201ENST00000603837 ZNF454Q8N9F8 522 aa6.19□□□□□ -1.42
LINC01109-201ENST00000603837 MCCP23508 829 aa6.19□□□□□ -1.42
LINC01109-201ENST00000603837 SMYD5Q6GMV2 418 aa6.19□□□□□ -1.42
LINC01109-201ENST00000603837 KCNH8Q96L42 1107 aa6.19□□□□□ -1.42
LINC01109-201ENST00000603837 CEP164Q9UPV0 1460 aa6.19□□□□□ -1.42
LINC01109-201ENST00000603837 JPH4Q96JJ6 628 aa6.19□□□□□ -1.42
LINC01109-201ENST00000603837 PSDA5PKW4 1024 aaPredicted RBP6.18□□□□□ -1.42
LINC01109-201ENST00000603837 FAM205CA6NFA0 338 aa6.18□□□□□ -1.42
LINC01109-201ENST00000603837 PHF14O94880 888 aa6.18□□□□□ -1.42
LINC01109-201ENST00000603837 FOSBP53539 338 aa6.18□□□□□ -1.42
LINC01109-201ENST00000603837 PCDHGA10Q9Y5H3 936 aa6.18□□□□□ -1.42
LINC01109-201ENST00000603837 VARS2Q5ST30 1063 aaKnown RBP6.18□□□□□ -1.42
LINC01109-201ENST00000603837 EEA1Q15075 1411 aa6.18□□□□□ -1.42
LINC01109-201ENST00000603837 IFT140Q96RY7 1462 aa6.18□□□□□ -1.42
LINC01109-201ENST00000603837 MAFGO15525 162 aa6.17□□□□□ -1.42
LINC01109-201ENST00000603837 SETQ01105 290 aaPredicted RBP6.17□□□□□ -1.42
LINC01109-201ENST00000603837 STAC3Q96MF2 364 aa6.17□□□□□ -1.42
LINC01109-201ENST00000603837 EPAS1Q99814 870 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms