RNA–Protein interactions for RNA: ENST00000586134.5

ZNF540-203, Transcript of zinc finger protein 540, humanhuman

TSL 5

Gene ZNF540, Length 2,038 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-203ENST00000586134 KANK1Q14678 1352 aa13.59□□□□□ -0.23
ZNF540-203ENST00000586134 WASHC2AQ641Q2 1341 aa13.58□□□□□ -0.23
ZNF540-203ENST00000586134 NBR1Q14596 966 aa13.58□□□□□ -0.24
ZNF540-203ENST00000586134 FBXO31Q5XUX0 539 aaPredicted RBP13.58□□□□□ -0.24
ZNF540-203ENST00000586134 NEURL4Q96JN8 1562 aa13.58□□□□□ -0.24
ZNF540-203ENST00000586134 MED14O60244 1454 aa13.57□□□□□ -0.24
ZNF540-203ENST00000586134 CFAP65Q6ZU64 1925 aaKnown RBP13.57□□□□□ -0.24
ZNF540-203ENST00000586134 THEMISQ8N1K5 641 aaPredicted RBP13.57□□□□□ -0.24
ZNF540-203ENST00000586134 RRP7BPQ9NSQ0 103 aa13.57□□□□□ -0.24
ZNF540-203ENST00000586134 USP35Q9P2H5 1018 aa13.57□□□□□ -0.24
ZNF540-203ENST00000586134 ROCK1Q13464 1354 aa13.57□□□□□ -0.24
ZNF540-203ENST00000586134 UBR1Q8IWV7 1749 aa13.57□□□□□ -0.24
ZNF540-203ENST00000586134 EFCAB6Q5THR3 1501 aa13.55□□□□□ -0.24
ZNF540-203ENST00000586134 ARXQ96QS3 562 aa13.55□□□□□ -0.24
ZNF540-203ENST00000586134 UNC13BO14795 1591 aa13.55□□□□□ -0.24
ZNF540-203ENST00000586134 NCKAP5LQ9HCH0 1330 aa13.54□□□□□ -0.24
ZNF540-203ENST00000586134 RPRD2Q5VT52 1461 aaKnown RBP13.54□□□□□ -0.24
ZNF540-203ENST00000586134 ANKRD50Q9ULJ7 1429 aa13.54□□□□□ -0.24
ZNF540-203ENST00000586134 TET3O43151 1660 aa13.53□□□□□ -0.24
ZNF540-203ENST00000586134 GCC2Q8IWJ2 1684 aa13.53□□□□□ -0.24
ZNF540-203ENST00000586134 RBM10P98175 930 aaKnown RBP13.52□□□□□ -0.24
ZNF540-203ENST00000586134 SLIT1O75093 1534 aa13.52□□□□□ -0.24
ZNF540-203ENST00000586134 ARHGAP23Q9P227 1491 aa13.52□□□□□ -0.25
ZNF540-203ENST00000586134 FAM50AQ14320 339 aaKnown RBP13.52□□□□□ -0.25
ZNF540-203ENST00000586134 ANKLE2Q86XL3 938 aa13.52□□□□□ -0.25
ZNF540-203ENST00000586134 IQGAP1P46940 1657 aa13.52□□□□□ -0.25
ZNF540-203ENST00000586134 CPS1P31327 1500 aa13.51□□□□□ -0.25
ZNF540-203ENST00000586134 CHIC2Q9UKJ5 165 aa13.51□□□□□ -0.25
ZNF540-203ENST00000586134 NOS1P29475 1434 aa13.5□□□□□ -0.25
ZNF540-203ENST00000586134 ITGAEP38570 1179 aa13.5□□□□□ -0.25
ZNF540-203ENST00000586134 PIK3C2BO00750 1634 aa13.5□□□□□ -0.25
ZNF540-203ENST00000586134 IQGAP3Q86VI3 1631 aa13.49□□□□□ -0.25
ZNF540-203ENST00000586134 SYNMO15061 1565 aa13.49□□□□□ -0.25
ZNF540-203ENST00000586134 NPHP4O75161 1426 aaPredicted RBP13.49□□□□□ -0.25
ZNF540-203ENST00000586134 TAF7LQ5H9L4 462 aa13.49□□□□□ -0.25
ZNF540-203ENST00000586134 RRBP1Q9P2E9 1410 aaKnown RBP13.49□□□□□ -0.25
ZNF540-203ENST00000586134 RRP9O43818 475 aaKnown RBP13.46□□□□□ -0.25
ZNF540-203ENST00000586134 FAM43AQ8N2R8 423 aa13.46□□□□□ -0.25
ZNF540-203ENST00000586134 SCAF11Q99590 1463 aaKnown RBP13.46□□□□□ -0.25
ZNF540-203ENST00000586134 ZNF335Q9H4Z2 1342 aaPredicted RBP13.46□□□□□ -0.26
ZNF540-203ENST00000586134 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.46□□□□□ -0.26
ZNF540-203ENST00000586134 TIMELESSQ9UNS1 1208 aa13.46□□□□□ -0.26
ZNF540-203ENST00000586134 ADGRB3O60242 1522 aa13.46□□□□□ -0.26
ZNF540-203ENST00000586134 SLC52A1Q9NWF4 448 aa13.45□□□□□ -0.26
ZNF540-203ENST00000586134 A0A0U1RQG5 324 aaPredicted RBP13.44□□□□□ -0.26
ZNF540-203ENST00000586134 E9PCH4 1651 aa13.43□□□□□ -0.26
ZNF540-203ENST00000586134 TMEM2Q9UHN6 1383 aa13.43□□□□□ -0.26
ZNF540-203ENST00000586134 PAK3O75914 559 aaPredicted RBP13.42□□□□□ -0.26
ZNF540-203ENST00000586134 BCL11BQ9C0K0 894 aaPredicted RBP13.41□□□□□ -0.26
ZNF540-203ENST00000586134 STRCP1A6NGW2 1772 aa13.41□□□□□ -0.26
ZNF540-203ENST00000586134 IPO9Q96P70 1041 aaKnown RBP13.4□□□□□ -0.26
ZNF540-203ENST00000586134 IDI1Q13907 227 aa13.4□□□□□ -0.26
ZNF540-203ENST00000586134 EID1Q9Y6B2 187 aa13.4□□□□□ -0.26
ZNF540-203ENST00000586134 TMEM131LA2VDJ0 1609 aa13.4□□□□□ -0.26
ZNF540-203ENST00000586134 MYO5BQ9ULV0 1848 aa13.39□□□□□ -0.27
ZNF540-203ENST00000586134 ZBTB47Q9UFB7 747 aaPredicted RBP13.38□□□□□ -0.27
ZNF540-203ENST00000586134 LTKP29376 864 aa13.37□□□□□ -0.27
ZNF540-203ENST00000586134 ANP32AP39687 249 aaKnown RBP13.37□□□□□ -0.27
ZNF540-203ENST00000586134 HSP90AA2PQ14568 343 aaPredicted RBP13.37□□□□□ -0.27
ZNF540-203ENST00000586134 TXNDC2Q86VQ3 553 aa13.37□□□□□ -0.27
ZNF540-203ENST00000586134 KLHL34Q8N239 644 aa13.37□□□□□ -0.27
ZNF540-203ENST00000586134 SPHKAPQ2M3C7 1700 aa13.37□□□□□ -0.27
ZNF540-203ENST00000586134 STAG3Q9UJ98 1225 aa13.36□□□□□ -0.27
ZNF540-203ENST00000586134 ZFYVE9O95405 1425 aa13.36□□□□□ -0.27
ZNF540-203ENST00000586134 NUP155O75694 1391 aa13.35□□□□□ -0.27
ZNF540-203ENST00000586134 NAIPQ13075 1403 aa13.35□□□□□ -0.27
ZNF540-203ENST00000586134 LRRC7Q96NW7 1537 aa13.35□□□□□ -0.27
ZNF540-203ENST00000586134 HFM1A2PYH4 1435 aa13.35□□□□□ -0.27
ZNF540-203ENST00000586134 NWD1Q149M9 1564 aa13.34□□□□□ -0.27
ZNF540-203ENST00000586134 NEFMP07197 916 aa13.34□□□□□ -0.27
ZNF540-203ENST00000586134 HDGFP51858 240 aaKnown RBP13.34□□□□□ -0.27
ZNF540-203ENST00000586134 ZNF326Q5BKZ1 582 aaKnown RBP13.34□□□□□ -0.27
ZNF540-203ENST00000586134 XIRP1Q702N8 1843 aaKnown RBP13.34□□□□□ -0.27
ZNF540-203ENST00000586134 BRPF3Q9ULD4 1205 aa13.34□□□□□ -0.27
ZNF540-203ENST00000586134 UBAP1LF5GYI3 381 aa13.33□□□□□ -0.28
ZNF540-203ENST00000586134 DIP2AQ14689 1571 aa13.33□□□□□ -0.28
ZNF540-203ENST00000586134 PLEKHG1Q9ULL1 1385 aa13.32□□□□□ -0.28
ZNF540-203ENST00000586134 TOM1O60784 492 aa13.32□□□□□ -0.28
ZNF540-203ENST00000586134 PPP4R2Q9NY27 417 aa13.32□□□□□ -0.28
ZNF540-203ENST00000586134 NKTRP30414 1462 aaKnown RBP13.32□□□□□ -0.28
ZNF540-203ENST00000586134 CHD2O14647 1828 aaKnown RBP13.32□□□□□ -0.28
ZNF540-203ENST00000586134 ALKQ9UM73 1620 aa13.31□□□□□ -0.28
ZNF540-203ENST00000586134 PPM1GO15355 546 aaPredicted RBP13.31□□□□□ -0.28
ZNF540-203ENST00000586134 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.31□□□□□ -0.28
ZNF540-203ENST00000586134 RIMS2Q9UQ26 1411 aa13.31□□□□□ -0.28
ZNF540-203ENST00000586134 TRPM2O94759 1503 aa13.3□□□□□ -0.28
ZNF540-203ENST00000586134 GSE1Q14687 1217 aa13.29□□□□□ -0.28
ZNF540-203ENST00000586134 KIF1BO60333 1816 aa13.28□□□□□ -0.28
ZNF540-203ENST00000586134 KCNA6P17658 529 aa13.28□□□□□ -0.28
ZNF540-203ENST00000586134 PIK3R4Q99570 1358 aa13.28□□□□□ -0.28
ZNF540-203ENST00000586134 CENPJQ9HC77 1338 aaPredicted RBP13.27□□□□□ -0.29
ZNF540-203ENST00000586134 NCOA3Q9Y6Q9 1424 aa13.26□□□□□ -0.29
ZNF540-203ENST00000586134 HSP90AA1P07900 732 aaKnown RBP13.26□□□□□ -0.29
ZNF540-203ENST00000586134 CALD1Q05682 793 aaKnown RBP13.26□□□□□ -0.29
ZNF540-203ENST00000586134 CCER2I3L3R5 266 aa13.25□□□□□ -0.29
ZNF540-203ENST00000586134 TBX22Q9Y458 520 aa13.25□□□□□ -0.29
ZNF540-203ENST00000586134 CLTCL1P53675 1640 aa13.25□□□□□ -0.29
ZNF540-203ENST00000586134 SETBP1Q9Y6X0 1596 aa13.25□□□□□ -0.29
ZNF540-203ENST00000586134 ADAMTS13Q76LX8 1427 aa13.23□□□□□ -0.29
ZNF540-203ENST00000586134 NRXN3Q9Y4C0 1643 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms