RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 RPRD2Q5VT52 1461 aaKnown RBP11.35□□□□□ -0.59
VPS39-213ENST00000570062 MAGI2Q86UL8 1455 aa11.34□□□□□ -0.59
VPS39-213ENST00000570062 MAP3K4Q9Y6R4 1608 aa11.34□□□□□ -0.59
VPS39-213ENST00000570062 KDM5CP41229 1560 aa11.33□□□□□ -0.6
VPS39-213ENST00000570062 UNC13BO14795 1591 aa11.33□□□□□ -0.6
VPS39-213ENST00000570062 INO80Q9ULG1 1556 aaPredicted RBP11.33□□□□□ -0.6
VPS39-213ENST00000570062 FAM135AQ9P2D6 1515 aa11.32□□□□□ -0.6
VPS39-213ENST00000570062 KIF3BO15066 747 aa11.32□□□□□ -0.6
VPS39-213ENST00000570062 BMP2KQ9NSY1 1161 aaPredicted RBP11.32□□□□□ -0.6
VPS39-213ENST00000570062 TRPC6Q9Y210 931 aa11.32□□□□□ -0.6
VPS39-213ENST00000570062 DIP2BQ9P265 1576 aa11.32□□□□□ -0.6
VPS39-213ENST00000570062 ATP10AO60312 1499 aa11.32□□□□□ -0.6
VPS39-213ENST00000570062 A2MP01023 1474 aa11.32□□□□□ -0.6
VPS39-213ENST00000570062 EIF2AK4Q9P2K8 1649 aaKnown RBP11.31□□□□□ -0.6
VPS39-213ENST00000570062 TIE1P35590 1138 aa11.3□□□□□ -0.6
VPS39-213ENST00000570062 CCDC144AA2RUR9 1427 aa11.29□□□□□ -0.6
VPS39-213ENST00000570062 L3MBTL2Q969R5 705 aa11.29□□□□□ -0.6
VPS39-213ENST00000570062 DISP3Q9P2K9 1392 aa11.28□□□□□ -0.6
VPS39-213ENST00000570062 IQGAP3Q86VI3 1631 aa11.28□□□□□ -0.6
VPS39-213ENST00000570062 POTEJP0CG39 1038 aa11.28□□□□□ -0.6
VPS39-213ENST00000570062 NUBP1P53384 320 aa11.28□□□□□ -0.6
VPS39-213ENST00000570062 MAMSTRQ6ZN01 415 aa11.28□□□□□ -0.6
VPS39-213ENST00000570062 RAPGEF3O95398 923 aa11.27□□□□□ -0.61
VPS39-213ENST00000570062 DIEXFQ68CQ4 756 aaKnown RBP11.27□□□□□ -0.61
VPS39-213ENST00000570062 TSPOAP1O95153 1857 aa11.26□□□□□ -0.61
VPS39-213ENST00000570062 LMTK2Q8IWU2 1503 aa11.25□□□□□ -0.61
VPS39-213ENST00000570062 SGIP1Q9BQI5 828 aa11.25□□□□□ -0.61
VPS39-213ENST00000570062 ZMYM4Q5VZL5 1548 aa11.25□□□□□ -0.61
VPS39-213ENST00000570062 DEPDC5O75140 1603 aa11.24□□□□□ -0.61
VPS39-213ENST00000570062 PCDHB13Q9Y5F0 798 aa11.24□□□□□ -0.61
VPS39-213ENST00000570062 PTPRTO14522 1441 aa11.24□□□□□ -0.61
VPS39-213ENST00000570062 PRDM15P57071 1507 aaPredicted RBP11.24□□□□□ -0.61
VPS39-213ENST00000570062 KIDINS220Q9ULH0 1771 aa11.23□□□□□ -0.61
VPS39-213ENST00000570062 TTLL13PA6NNM8 815 aa11.23□□□□□ -0.61
VPS39-213ENST00000570062 EIF4G2P78344 907 aaKnown RBP eCLIP11.23□□□□□ -0.61
VPS39-213ENST00000570062 FAM212AQ96EL1 285 aa11.23□□□□□ -0.61
VPS39-213ENST00000570062 WASHC2CQ9Y4E1 1318 aa11.23□□□□□ -0.61
VPS39-213ENST00000570062 VWDEQ8N2E2 1590 aa11.23□□□□□ -0.61
VPS39-213ENST00000570062 UHRF1BP1Q6BDS2 1440 aa11.22□□□□□ -0.61
VPS39-213ENST00000570062 SCUBE2Q9NQ36 999 aa11.22□□□□□ -0.61
VPS39-213ENST00000570062 PLSCR2Q9NRY7 297 aa11.22□□□□□ -0.61
VPS39-213ENST00000570062 BCORL1Q5H9F3 1711 aa11.21□□□□□ -0.61
VPS39-213ENST00000570062 REREQ9P2R6 1566 aa11.21□□□□□ -0.61
VPS39-213ENST00000570062 POTEFA5A3E0 1075 aa11.21□□□□□ -0.61
VPS39-213ENST00000570062 GGT6Q6P531 493 aa11.21□□□□□ -0.61
VPS39-213ENST00000570062 RNF17Q9BXT8 1623 aaKnown RBP11.2□□□□□ -0.62
VPS39-213ENST00000570062 AGLP35573 1532 aa11.19□□□□□ -0.62
VPS39-213ENST00000570062 ARHGAP31Q2M1Z3 1444 aa11.19□□□□□ -0.62
VPS39-213ENST00000570062 RICTORQ6R327 1708 aa11.19□□□□□ -0.62
VPS39-213ENST00000570062 POTEMA6NI47 508 aa11.19□□□□□ -0.62
VPS39-213ENST00000570062 SLC24A1O60721 1099 aa11.19□□□□□ -0.62
VPS39-213ENST00000570062 SEC24BO95487 1268 aa11.19□□□□□ -0.62
VPS39-213ENST00000570062 TET3O43151 1660 aa11.19□□□□□ -0.62
VPS39-213ENST00000570062 NEURL4Q96JN8 1562 aa11.19□□□□□ -0.62
VPS39-213ENST00000570062 PLA2R1Q13018 1463 aa11.19□□□□□ -0.62
VPS39-213ENST00000570062 DCAF11Q8TEB1 546 aa11.18□□□□□ -0.62
VPS39-213ENST00000570062 TRPM2O94759 1503 aa11.18□□□□□ -0.62
VPS39-213ENST00000570062 CNTLNQ9NXG0 1405 aa11.18□□□□□ -0.62
VPS39-213ENST00000570062 ARID4BQ4LE39 1312 aaPredicted RBP11.17□□□□□ -0.62
VPS39-213ENST00000570062 RPGRIP1LQ68CZ1 1315 aa11.17□□□□□ -0.62
VPS39-213ENST00000570062 DIP2CQ9Y2E4 1556 aa11.17□□□□□ -0.62
VPS39-213ENST00000570062 SLC52A1Q9NWF4 448 aa11.17□□□□□ -0.62
VPS39-213ENST00000570062 FBXO3Q9UK99 471 aa11.17□□□□□ -0.62
VPS39-213ENST00000570062 TRIM35Q9UPQ4 493 aa11.17□□□□□ -0.62
VPS39-213ENST00000570062 SPATA31D1Q6ZQQ2 1576 aa11.16□□□□□ -0.62
VPS39-213ENST00000570062 POTEGQ6S5H5 508 aa11.16□□□□□ -0.62
VPS39-213ENST00000570062 IFNL1Q8IU54 200 aa11.16□□□□□ -0.62
VPS39-213ENST00000570062 ESF1Q9H501 851 aaKnown RBP11.16□□□□□ -0.62
VPS39-213ENST00000570062 ABCA6Q8N139 1617 aa11.16□□□□□ -0.62
VPS39-213ENST00000570062 FRMPD1Q5SYB0 1578 aa11.16□□□□□ -0.62
VPS39-213ENST00000570062 EFCAB6Q5THR3 1501 aa11.15□□□□□ -0.62
VPS39-213ENST00000570062 COLQQ9Y215 455 aaPredicted RBP11.15□□□□□ -0.62
VPS39-213ENST00000570062 YEATS2Q9ULM3 1422 aa11.15□□□□□ -0.62
VPS39-213ENST00000570062 NBPF8Q3BBV2 869 aa11.14□□□□□ -0.63
VPS39-213ENST00000570062 PPRC1Q5VV67 1664 aaKnown RBP11.14□□□□□ -0.63
VPS39-213ENST00000570062 MROH1Q8NDA8 1641 aa11.13□□□□□ -0.63
VPS39-213ENST00000570062 SPATA31E1Q6ZUB1 1445 aa11.13□□□□□ -0.63
VPS39-213ENST00000570062 RGL3Q3MIN7 710 aa11.13□□□□□ -0.63
VPS39-213ENST00000570062 IER5LQ5T953 404 aa11.13□□□□□ -0.63
VPS39-213ENST00000570062 DCAF8Q5TAQ9 597 aa11.13□□□□□ -0.63
VPS39-213ENST00000570062 CARD11Q9BXL7 1154 aa11.13□□□□□ -0.63
VPS39-213ENST00000570062 ZC3H13Q5T200 1668 aaKnown RBP11.13□□□□□ -0.63
VPS39-213ENST00000570062 ABCC3O15438 1527 aa11.13□□□□□ -0.63
VPS39-213ENST00000570062 RALGAPBQ86X10 1494 aa11.12□□□□□ -0.63
VPS39-213ENST00000570062 HSPA5P11021 654 aaKnown RBP11.12□□□□□ -0.63
VPS39-213ENST00000570062 KDM2AQ9Y2K7 1162 aa11.12□□□□□ -0.63
VPS39-213ENST00000570062 NPATQ14207 1427 aa11.11□□□□□ -0.63
VPS39-213ENST00000570062 TMEM106CQ9BVX2 250 aa11.11□□□□□ -0.63
VPS39-213ENST00000570062 NOS1P29475 1434 aa11.1□□□□□ -0.63
VPS39-213ENST00000570062 PRAG1Q86YV5 1406 aa11.1□□□□□ -0.63
VPS39-213ENST00000570062 ZNF326Q5BKZ1 582 aaKnown RBP11.1□□□□□ -0.63
VPS39-213ENST00000570062 FAM163AQ96GL9 167 aaPredicted RBP11.1□□□□□ -0.63
VPS39-213ENST00000570062 ROCK2O75116 1388 aaKnown RBP11.1□□□□□ -0.63
VPS39-213ENST00000570062 GPRASP1Q5JY77 1395 aa11.1□□□□□ -0.63
VPS39-213ENST00000570062 E9PCH4 1651 aa11.1□□□□□ -0.63
VPS39-213ENST00000570062 VGFO15240 615 aaPredicted RBP11.09□□□□□ -0.63
VPS39-213ENST00000570062 ARHGEF40Q8TER5 1519 aa11.09□□□□□ -0.63
VPS39-213ENST00000570062 COL17A1Q9UMD9 1497 aaPredicted RBP11.08□□□□□ -0.64
VPS39-213ENST00000570062 HDGFP51858 240 aaKnown RBP11.08□□□□□ -0.64
VPS39-213ENST00000570062 SPHKAPQ2M3C7 1700 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms