RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 GCC2Q8IWJ2 1684 aa15.6■□□□□ 0.09
CCDC88C-211ENST00000556726 ITPRIPQ8IWB1 547 aa15.6■□□□□ 0.09
CCDC88C-211ENST00000556726 RALGAPBQ86X10 1494 aa15.59■□□□□ 0.09
CCDC88C-211ENST00000556726 EIF3AQ14152 1382 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-211ENST00000556726 FAM161AQ3B820 660 aa15.59■□□□□ 0.09
CCDC88C-211ENST00000556726 SMC4Q9NTJ3 1288 aa15.59■□□□□ 0.09
CCDC88C-211ENST00000556726 TCP11L2Q8N4U5 519 aa15.58■□□□□ 0.09
CCDC88C-211ENST00000556726 SPINK5Q9NQ38 1064 aaPredicted RBP15.58■□□□□ 0.09
CCDC88C-211ENST00000556726 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.58■□□□□ 0.09
CCDC88C-211ENST00000556726 SYCP2Q9BX26 1530 aa15.58■□□□□ 0.08
CCDC88C-211ENST00000556726 E9PSI1 815 aa15.58■□□□□ 0.08
CCDC88C-211ENST00000556726 GZF1Q9H116 711 aaPredicted RBP15.58■□□□□ 0.08
CCDC88C-211ENST00000556726 PRAG1Q86YV5 1406 aa15.57■□□□□ 0.08
CCDC88C-211ENST00000556726 APBB1O00213 710 aa15.57■□□□□ 0.08
CCDC88C-211ENST00000556726 IL27Q8NEV9 243 aa15.57■□□□□ 0.08
CCDC88C-211ENST00000556726 RAPGEF3O95398 923 aa15.57■□□□□ 0.08
CCDC88C-211ENST00000556726 DUSP27Q5VZP5 1158 aa15.57■□□□□ 0.08
CCDC88C-211ENST00000556726 TSR2Q969E8 191 aaKnown RBP15.57■□□□□ 0.08
CCDC88C-211ENST00000556726 MFAP1P55081 439 aaKnown RBP15.56■□□□□ 0.08
CCDC88C-211ENST00000556726 MS4A1P11836 297 aa15.56■□□□□ 0.08
CCDC88C-211ENST00000556726 BECN1Q14457 450 aa15.55■□□□□ 0.08
CCDC88C-211ENST00000556726 FAM135AQ9P2D6 1515 aa15.55■□□□□ 0.08
CCDC88C-211ENST00000556726 CEP170Q5SW79 1584 aa15.55■□□□□ 0.08
CCDC88C-211ENST00000556726 DMRT2Q9Y5R5 561 aa15.54■□□□□ 0.08
CCDC88C-211ENST00000556726 AMER1Q5JTC6 1135 aaPredicted RBP15.54■□□□□ 0.08
CCDC88C-211ENST00000556726 PARD3Q8TEW0 1356 aa15.53■□□□□ 0.08
CCDC88C-211ENST00000556726 PLEKHH1Q9ULM0 1364 aa15.53■□□□□ 0.08
CCDC88C-211ENST00000556726 SLFN5Q08AF3 891 aa15.53■□□□□ 0.08
CCDC88C-211ENST00000556726 TNNQ9UQP3 1299 aa15.53■□□□□ 0.08
CCDC88C-211ENST00000556726 NFKBIBQ15653 356 aa15.53■□□□□ 0.08
CCDC88C-211ENST00000556726 FOXD4L1Q9NU39 408 aa15.52■□□□□ 0.08
CCDC88C-211ENST00000556726 TRAPPC8Q9Y2L5 1435 aa15.52■□□□□ 0.08
CCDC88C-211ENST00000556726 FBLN1P23142 703 aa15.52■□□□□ 0.07
CCDC88C-211ENST00000556726 BCORL1Q5H9F3 1711 aa15.52■□□□□ 0.07
CCDC88C-211ENST00000556726 ZBTB7CA1YPR0 619 aa15.51■□□□□ 0.07
CCDC88C-211ENST00000556726 FRAT2O75474 233 aaPredicted RBP15.5■□□□□ 0.07
CCDC88C-211ENST00000556726 A2MP01023 1474 aa15.5■□□□□ 0.07
CCDC88C-211ENST00000556726 LRPPRCP42704 1394 aaKnown RBP15.5■□□□□ 0.07
CCDC88C-211ENST00000556726 HMOX1P09601 288 aa15.5■□□□□ 0.07
CCDC88C-211ENST00000556726 CGNL1Q0VF96 1302 aa15.49■□□□□ 0.07
CCDC88C-211ENST00000556726 TPRNQ4KMQ1 711 aa15.49■□□□□ 0.07
CCDC88C-211ENST00000556726 CYB5RLQ6IPT4 315 aa15.49■□□□□ 0.07
CCDC88C-211ENST00000556726 WWC1Q8IX03 1113 aa15.49■□□□□ 0.07
CCDC88C-211ENST00000556726 CARD14Q9BXL6 1004 aa15.49■□□□□ 0.07
CCDC88C-211ENST00000556726 IGHDP01880 384 aa15.48■□□□□ 0.07
CCDC88C-211ENST00000556726 RUNDC1Q96C34 613 aa15.48■□□□□ 0.07
CCDC88C-211ENST00000556726 MYH16Q9H6N6 1097 aa15.48■□□□□ 0.07
CCDC88C-211ENST00000556726 ITSN2Q9NZM3 1697 aa15.48■□□□□ 0.07
CCDC88C-211ENST00000556726 BRPF3Q9ULD4 1205 aa15.48■□□□□ 0.07
CCDC88C-211ENST00000556726 C14orf37Q86TY3 774 aa15.48■□□□□ 0.07
CCDC88C-211ENST00000556726 RNF123Q5XPI4 1314 aa15.47■□□□□ 0.07
CCDC88C-211ENST00000556726 RWDD1Q9H446 243 aaPredicted RBP15.47■□□□□ 0.07
CCDC88C-211ENST00000556726 ADGRL2O95490 1459 aa15.46■□□□□ 0.07
CCDC88C-211ENST00000556726 UHRF1BP1Q6BDS2 1440 aa15.46■□□□□ 0.07
CCDC88C-211ENST00000556726 NUP160Q12769 1436 aa15.45■□□□□ 0.06
CCDC88C-211ENST00000556726 RIPK4P57078 832 aa15.45■□□□□ 0.06
CCDC88C-211ENST00000556726 EXOSC9Q06265 439 aaKnown RBP15.45■□□□□ 0.06
CCDC88C-211ENST00000556726 EVC2Q86UK5 1308 aa15.45■□□□□ 0.06
CCDC88C-211ENST00000556726 MBD5Q9P267 1494 aa15.44■□□□□ 0.06
CCDC88C-211ENST00000556726 HDGFL2Q7Z4V5 671 aaPredicted RBP15.44■□□□□ 0.06
CCDC88C-211ENST00000556726 NSD3Q9BZ95 1437 aa15.44■□□□□ 0.06
CCDC88C-211ENST00000556726 GSE1Q14687 1217 aa15.44■□□□□ 0.06
CCDC88C-211ENST00000556726 VGFO15240 615 aaPredicted RBP15.43■□□□□ 0.06
CCDC88C-211ENST00000556726 PMFBP1Q8TBY8 1022 aa15.43■□□□□ 0.06
CCDC88C-211ENST00000556726 KDM5CP41229 1560 aa15.43■□□□□ 0.06
CCDC88C-211ENST00000556726 PDZRN3Q9UPQ7 1066 aa15.43■□□□□ 0.06
CCDC88C-211ENST00000556726 ABCC10Q5T3U5 1492 aa15.42■□□□□ 0.06
CCDC88C-211ENST00000556726 ZKSCAN2Q63HK3 967 aa15.42■□□□□ 0.06
CCDC88C-211ENST00000556726 THUMPD2Q9BTF0 503 aaKnown RBP15.42■□□□□ 0.06
CCDC88C-211ENST00000556726 LNPKQ9C0E8 428 aa15.42■□□□□ 0.06
CCDC88C-211ENST00000556726 PRAM1Q96QH2 718 aa15.42■□□□□ 0.06
CCDC88C-211ENST00000556726 C1orf115Q9H7X2 142 aa15.42■□□□□ 0.06
CCDC88C-211ENST00000556726 DZIP1LQ8IYY4 767 aaKnown RBP15.41■□□□□ 0.06
CCDC88C-211ENST00000556726 TERF2IPQ9NYB0 399 aa15.41■□□□□ 0.06
CCDC88C-211ENST00000556726 PLA2R1Q13018 1463 aa15.39■□□□□ 0.05
CCDC88C-211ENST00000556726 NCLP19338 710 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-211ENST00000556726 SEC24BO95487 1268 aa15.38■□□□□ 0.05
CCDC88C-211ENST00000556726 NOS1P29475 1434 aa15.38■□□□□ 0.05
CCDC88C-211ENST00000556726 COL17A1Q9UMD9 1497 aaPredicted RBP15.38■□□□□ 0.05
CCDC88C-211ENST00000556726 HSP90AB1P08238 724 aaKnown RBP15.38■□□□□ 0.05
CCDC88C-211ENST00000556726 RLBP1P12271 317 aa15.38■□□□□ 0.05
CCDC88C-211ENST00000556726 ANKRD45Q5TZF3 282 aa15.38■□□□□ 0.05
CCDC88C-211ENST00000556726 CABP1Q9NZU7 370 aa15.38■□□□□ 0.05
CCDC88C-211ENST00000556726 ARHGEF12Q9NZN5 1544 aa15.37■□□□□ 0.05
CCDC88C-211ENST00000556726 RARSP54136 660 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-211ENST00000556726 CFAP65Q6ZU64 1925 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-211ENST00000556726 DIAPH1O60610 1272 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-211ENST00000556726 SCAF11Q99590 1463 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-211ENST00000556726 FBXO31Q5XUX0 539 aaPredicted RBP15.36■□□□□ 0.05
CCDC88C-211ENST00000556726 PLCH2O75038 1416 aa15.36■□□□□ 0.05
CCDC88C-211ENST00000556726 PCDHB15Q9Y5E8 787 aa15.36■□□□□ 0.05
CCDC88C-211ENST00000556726 MAGI2Q86UL8 1455 aa15.36■□□□□ 0.05
CCDC88C-211ENST00000556726 SHANK2Q9UPX8 1470 aa15.36■□□□□ 0.05
CCDC88C-211ENST00000556726 OSCARQ8IYS5 282 aa15.36■□□□□ 0.05
CCDC88C-211ENST00000556726 WAPLQ7Z5K2 1190 aa15.35■□□□□ 0.05
CCDC88C-211ENST00000556726 HSCBQ8IWL3 235 aa15.35■□□□□ 0.05
CCDC88C-211ENST00000556726 C8orf34Q49A92 452 aa15.35■□□□□ 0.05
CCDC88C-211ENST00000556726 USP35Q9P2H5 1018 aa15.35■□□□□ 0.05
CCDC88C-211ENST00000556726 NOB1Q9ULX3 412 aaKnown RBP15.35■□□□□ 0.05
CCDC88C-211ENST00000556726 IDI1Q13907 227 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms