RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 TRIM6-TRIM34B2RNG4 842 aa8.7□□□□□ -1.02
TDP1-215ENST00000556498 ONECUT3O60422 494 aaPredicted RBP8.7□□□□□ -1.02
TDP1-215ENST00000556498 MDM2Q00987 491 aaPredicted RBP8.7□□□□□ -1.02
TDP1-215ENST00000556498 GIGYF2Q6Y7W6 1299 aaKnown RBP8.7□□□□□ -1.02
TDP1-215ENST00000556498 RBM46Q8TBY0 533 aaKnown RBP8.7□□□□□ -1.02
TDP1-215ENST00000556498 KCNH8Q96L42 1107 aa8.7□□□□□ -1.02
TDP1-215ENST00000556498 EYA1Q99502 592 aa8.7□□□□□ -1.02
TDP1-215ENST00000556498 GPCPD1Q9NPB8 672 aa8.7□□□□□ -1.02
TDP1-215ENST00000556498 ARHGAP33O14559 1287 aa8.69□□□□□ -1.02
TDP1-215ENST00000556498 PSEN2P49810 448 aa8.69□□□□□ -1.02
TDP1-215ENST00000556498 POTEEQ6S8J3 1075 aa8.69□□□□□ -1.02
TDP1-215ENST00000556498 PACS2Q86VP3 889 aa8.69□□□□□ -1.02
TDP1-215ENST00000556498 YTHDC1Q96MU7 727 aaKnown RBP8.69□□□□□ -1.02
TDP1-215ENST00000556498 FAM205CA6NFA0 338 aa8.68□□□□□ -1.02
TDP1-215ENST00000556498 PROX2Q3B8N5 592 aa8.68□□□□□ -1.02
TDP1-215ENST00000556498 ZNF687Q8N1G0 1237 aa8.68□□□□□ -1.02
TDP1-215ENST00000556498 DDRGK1Q96HY6 314 aa8.68□□□□□ -1.02
TDP1-215ENST00000556498 ZBED2Q9BTP6 218 aa8.68□□□□□ -1.02
TDP1-215ENST00000556498 PLEKHG3A1L390 1219 aa8.67□□□□□ -1.02
TDP1-215ENST00000556498 C3orf80F5H4A9 247 aa8.67□□□□□ -1.02
TDP1-215ENST00000556498 MS4A1P11836 297 aa8.67□□□□□ -1.02
TDP1-215ENST00000556498 RBM10P98175 930 aaKnown RBP8.67□□□□□ -1.02
TDP1-215ENST00000556498 NUDT18Q6ZVK8 323 aa8.67□□□□□ -1.02
TDP1-215ENST00000556498 NLRP7Q8WX94 980 aa8.67□□□□□ -1.02
TDP1-215ENST00000556498 TATDN2Q93075 761 aa8.67□□□□□ -1.02
TDP1-215ENST00000556498 NBPF26B4DH59 902 aa8.66□□□□□ -1.02
TDP1-215ENST00000556498 PBX2P40425 430 aa8.66□□□□□ -1.02
TDP1-215ENST00000556498 SLC4A5Q9BY07 1137 aa8.66□□□□□ -1.02
TDP1-215ENST00000556498 AXIN2Q9Y2T1 843 aa8.66□□□□□ -1.02
TDP1-215ENST00000556498 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.65□□□□□ -1.02
TDP1-215ENST00000556498 POTEB3A0JP26 581 aa8.65□□□□□ -1.02
TDP1-215ENST00000556498 RCCD1A6NED2 376 aa8.65□□□□□ -1.02
TDP1-215ENST00000556498 SSTR3P32745 418 aaPredicted RBP8.65□□□□□ -1.02
TDP1-215ENST00000556498 LCE2DQ5TA82 110 aaPredicted RBP8.65□□□□□ -1.02
TDP1-215ENST00000556498 POTEBQ6S5H4 581 aa8.65□□□□□ -1.02
TDP1-215ENST00000556498 KIAA1468Q9P260 1216 aa8.65□□□□□ -1.02
TDP1-215ENST00000556498 PNMA3Q9UL41 463 aa8.65□□□□□ -1.02
TDP1-215ENST00000556498 DMRTA1Q5VZB9 504 aa8.64□□□□□ -1.03
TDP1-215ENST00000556498 HS3ST6Q96QI5 342 aa8.64□□□□□ -1.03
TDP1-215ENST00000556498 ZMYND15Q9H091 742 aa8.64□□□□□ -1.03
TDP1-215ENST00000556498 FAM217BQ9NTX9 383 aaPredicted RBP8.64□□□□□ -1.03
TDP1-215ENST00000556498 SMAPO00193 183 aa8.62□□□□□ -1.03
TDP1-215ENST00000556498 RABGEF1Q9UJ41 708 aa8.62□□□□□ -1.03
TDP1-215ENST00000556498 CCDC9Q9Y3X0 531 aaKnown RBP8.62□□□□□ -1.03
TDP1-215ENST00000556498 DNAJB2P25686 324 aa8.61□□□□□ -1.03
TDP1-215ENST00000556498 PUS7Q96PZ0 661 aaKnown RBP8.61□□□□□ -1.03
TDP1-215ENST00000556498 POLR3GLQ9BT43 218 aa8.61□□□□□ -1.03
TDP1-215ENST00000556498 VPS9D1Q9Y2B5 631 aa8.61□□□□□ -1.03
TDP1-215ENST00000556498 DEKP35659 375 aaKnown RBP8.6□□□□□ -1.03
TDP1-215ENST00000556498 BEGAINQ9BUH8 593 aa8.6□□□□□ -1.03
TDP1-215ENST00000556498 TMEM134Q9H6X4 195 aa8.6□□□□□ -1.03
TDP1-215ENST00000556498 A0A0U1RQG5 324 aaPredicted RBP8.59□□□□□ -1.03
TDP1-215ENST00000556498 GOPCQ9HD26 462 aa8.59□□□□□ -1.03
TDP1-215ENST00000556498 CCDC136Q96JN2 1154 aa8.58□□□□□ -1.04
TDP1-215ENST00000556498 TK2O00142 265 aa8.57□□□□□ -1.04
TDP1-215ENST00000556498 BHMG1C9JSJ3 638 aaPredicted RBP8.56□□□□□ -1.04
TDP1-215ENST00000556498 SULF1Q8IWU6 871 aa8.56□□□□□ -1.04
TDP1-215ENST00000556498 SEPT9Q9UHD8 586 aaPredicted RBP8.56□□□□□ -1.04
TDP1-215ENST00000556498 CLSTN1O94985 981 aa8.55□□□□□ -1.04
TDP1-215ENST00000556498 TICAM2Q86XR7 235 aa8.55□□□□□ -1.04
TDP1-215ENST00000556498 DDX11L8A8MPP1 907 aa8.54□□□□□ -1.04
TDP1-215ENST00000556498 SUPT5HO00267 1087 aaKnown RBP8.54□□□□□ -1.04
TDP1-215ENST00000556498 CD46P15529 392 aa8.54□□□□□ -1.04
TDP1-215ENST00000556498 NCLP19338 710 aaKnown RBP8.54□□□□□ -1.04
TDP1-215ENST00000556498 LSM11P83369 360 aaKnown RBP eCLIP8.54□□□□□ -1.04
TDP1-215ENST00000556498 FAM98CQ17RN3 349 aaKnown RBP8.54□□□□□ -1.04
TDP1-215ENST00000556498 LAPTM4BQ86VI4 370 aa8.54□□□□□ -1.04
TDP1-215ENST00000556498 SH3D19Q5HYK7 790 aa8.53□□□□□ -1.04
TDP1-215ENST00000556498 NBPF3Q9H094 633 aa8.53□□□□□ -1.04
TDP1-215ENST00000556498 UBTFP17480 764 aaKnown RBP8.52□□□□□ -1.05
TDP1-215ENST00000556498 HDGFP51858 240 aaKnown RBP8.52□□□□□ -1.05
TDP1-215ENST00000556498 SKIV2LQ15477 1246 aaKnown RBP8.52□□□□□ -1.05
TDP1-215ENST00000556498 SWT1Q5T5J6 900 aaKnown RBP8.52□□□□□ -1.05
TDP1-215ENST00000556498 ADGRD1Q6QNK2 874 aa8.52□□□□□ -1.05
TDP1-215ENST00000556498 TEX2Q8IWB9 1127 aa8.52□□□□□ -1.05
TDP1-215ENST00000556498 IPO4Q8TEX9 1081 aaKnown RBP8.52□□□□□ -1.05
TDP1-215ENST00000556498 DIXDC1Q155Q3 683 aa8.51□□□□□ -1.05
TDP1-215ENST00000556498 PCMTD1Q96MG8 357 aaPredicted RBP8.51□□□□□ -1.05
TDP1-215ENST00000556498 TBC1D2Q9BYX2 928 aa8.51□□□□□ -1.05
TDP1-215ENST00000556498 HRO43593 1189 aa8.5□□□□□ -1.05
TDP1-215ENST00000556498 MYSM1Q5VVJ2 828 aa8.5□□□□□ -1.05
TDP1-215ENST00000556498 SPIRE2Q8WWL2 714 aa8.5□□□□□ -1.05
TDP1-215ENST00000556498 NAP1L2Q9ULW6 460 aaPredicted RBP8.5□□□□□ -1.05
TDP1-215ENST00000556498 MRPL50Q8N5N7 158 aaKnown RBP8.49□□□□□ -1.05
TDP1-215ENST00000556498 RDH13Q8NBN7 331 aa8.49□□□□□ -1.05
TDP1-215ENST00000556498 ZFRQ96KR1 1074 aaKnown RBP8.49□□□□□ -1.05
TDP1-215ENST00000556498 POLR3EQ9NVU0 708 aa8.49□□□□□ -1.05
TDP1-215ENST00000556498 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.49□□□□□ -1.05
TDP1-215ENST00000556498 SLC10A3P09131 477 aa8.48□□□□□ -1.05
TDP1-215ENST00000556498 PTMSP20962 102 aa8.48□□□□□ -1.05
TDP1-215ENST00000556498 ANKRD13DQ6ZTN6 518 aa8.48□□□□□ -1.05
TDP1-215ENST00000556498 SAMD7Q7Z3H4 446 aa8.48□□□□□ -1.05
TDP1-215ENST00000556498 PCGF6Q9BYE7 350 aa8.48□□□□□ -1.05
TDP1-215ENST00000556498 GCGRP47871 477 aa8.47□□□□□ -1.05
TDP1-215ENST00000556498 NUTM1Q86Y26 1132 aa8.47□□□□□ -1.05
TDP1-215ENST00000556498 PROCA1Q8NCQ7 364 aaPredicted RBP8.47□□□□□ -1.05
TDP1-215ENST00000556498 SLC4A3P48751 1232 aa8.46□□□□□ -1.06
TDP1-215ENST00000556498 SLF2Q8IX21 1173 aa8.46□□□□□ -1.06
TDP1-215ENST00000556498 ARID4BQ4LE39 1312 aaPredicted RBP8.46□□□□□ -1.06
TDP1-215ENST00000556498 CLK2P49760 499 aaKnown RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms