RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 CEP152O94986 1710 aa16.92■□□□□ 0.3
SYNE2-221ENST00000556342 UBR1Q8IWV7 1749 aa16.92■□□□□ 0.3
SYNE2-221ENST00000556342 LOC105371045A0A1W2PR82 267 aa16.91■□□□□ 0.3
SYNE2-221ENST00000556342 ARHGAP23Q9P227 1491 aa16.91■□□□□ 0.3
SYNE2-221ENST00000556342 PRDM15P57071 1507 aaPredicted RBP16.91■□□□□ 0.3
SYNE2-221ENST00000556342 LTKP29376 864 aa16.9■□□□□ 0.3
SYNE2-221ENST00000556342 SLIT1O75093 1534 aa16.9■□□□□ 0.3
SYNE2-221ENST00000556342 ERBINQ96RT1 1412 aa16.89■□□□□ 0.29
SYNE2-221ENST00000556342 TXNDC2Q86VQ3 553 aa16.89■□□□□ 0.29
SYNE2-221ENST00000556342 ABCC5O15440 1437 aa16.88■□□□□ 0.29
SYNE2-221ENST00000556342 RRP7BPQ9NSQ0 103 aa16.88■□□□□ 0.29
SYNE2-221ENST00000556342 SPDYE4A6NLX3 237 aa16.87■□□□□ 0.29
SYNE2-221ENST00000556342 PITPNM1O00562 1244 aa16.87■□□□□ 0.29
SYNE2-221ENST00000556342 EID1Q9Y6B2 187 aa16.86■□□□□ 0.29
SYNE2-221ENST00000556342 CFAP65Q6ZU64 1925 aaKnown RBP16.85■□□□□ 0.29
SYNE2-221ENST00000556342 TMEM2Q9UHN6 1383 aa16.84■□□□□ 0.29
SYNE2-221ENST00000556342 CROCC2H7BZ55 1655 aa16.83■□□□□ 0.28
SYNE2-221ENST00000556342 DAPK1P53355 1430 aa16.83■□□□□ 0.28
SYNE2-221ENST00000556342 KANK1Q14678 1352 aa16.83■□□□□ 0.28
SYNE2-221ENST00000556342 PTPN23Q9H3S7 1636 aa16.82■□□□□ 0.28
SYNE2-221ENST00000556342 POTEHQ6S545 545 aa16.82■□□□□ 0.28
SYNE2-221ENST00000556342 SPDYE1Q8NFV5 336 aaPredicted RBP16.82■□□□□ 0.28
SYNE2-221ENST00000556342 PIK3C2BO00750 1634 aa16.81■□□□□ 0.28
SYNE2-221ENST00000556342 STAG3Q9UJ98 1225 aa16.81■□□□□ 0.28
SYNE2-221ENST00000556342 LMTK2Q8IWU2 1503 aa16.8■□□□□ 0.28
SYNE2-221ENST00000556342 EFCAB6Q5THR3 1501 aa16.8■□□□□ 0.28
SYNE2-221ENST00000556342 FGD6Q6ZV73 1430 aa16.79■□□□□ 0.28
SYNE2-221ENST00000556342 IDI1Q13907 227 aa16.79■□□□□ 0.28
SYNE2-221ENST00000556342 ANKRD30AQ9BXX3 1397 aa16.78■□□□□ 0.28
SYNE2-221ENST00000556342 FAM135BQ49AJ0 1406 aa16.78■□□□□ 0.28
SYNE2-221ENST00000556342 TMEM94Q12767 1356 aa16.77■□□□□ 0.28
SYNE2-221ENST00000556342 XIRP1Q702N8 1843 aaKnown RBP16.77■□□□□ 0.28
SYNE2-221ENST00000556342 CHIC2Q9UKJ5 165 aa16.77■□□□□ 0.28
SYNE2-221ENST00000556342 KDM5AP29375 1690 aaKnown RBP16.76■□□□□ 0.27
SYNE2-221ENST00000556342 KCNA6P17658 529 aa16.76■□□□□ 0.27
SYNE2-221ENST00000556342 RGS17Q9UGC6 210 aaPredicted RBP16.76■□□□□ 0.27
SYNE2-221ENST00000556342 NOS1P29475 1434 aa16.76■□□□□ 0.27
SYNE2-221ENST00000556342 SLC26A8Q96RN1 970 aa16.74■□□□□ 0.27
SYNE2-221ENST00000556342 TET3O43151 1660 aa16.74■□□□□ 0.27
SYNE2-221ENST00000556342 ADGRB3O60242 1522 aa16.72■□□□□ 0.27
SYNE2-221ENST00000556342 PROSER2Q86WR7 435 aaPredicted RBP16.72■□□□□ 0.27
SYNE2-221ENST00000556342 RBM33Q96EV2 1170 aaKnown RBP16.71■□□□□ 0.27
SYNE2-221ENST00000556342 SLC52A1Q9NWF4 448 aa16.71■□□□□ 0.27
SYNE2-221ENST00000556342 ADGRL2O95490 1459 aa16.71■□□□□ 0.27
SYNE2-221ENST00000556342 NKTRP30414 1462 aaKnown RBP16.71■□□□□ 0.27
SYNE2-221ENST00000556342 CLEC11AQ9Y240 323 aa16.7■□□□□ 0.26
SYNE2-221ENST00000556342 NWD1Q149M9 1564 aa16.69■□□□□ 0.26
SYNE2-221ENST00000556342 RPRD2Q5VT52 1461 aaKnown RBP16.67■□□□□ 0.26
SYNE2-221ENST00000556342 ROBO1Q9Y6N7 1651 aa16.67■□□□□ 0.26
SYNE2-221ENST00000556342 BCANQ96GW7 911 aa16.67■□□□□ 0.26
SYNE2-221ENST00000556342 ANKRD50Q9ULJ7 1429 aa16.67■□□□□ 0.26
SYNE2-221ENST00000556342 MSH6P52701 1360 aa16.66■□□□□ 0.26
SYNE2-221ENST00000556342 ZFYVE9O95405 1425 aa16.66■□□□□ 0.26
SYNE2-221ENST00000556342 FXR2P51116 673 aaKnown RBP eCLIP16.66■□□□□ 0.26
SYNE2-221ENST00000556342 PLEKHG1Q9ULL1 1385 aa16.65■□□□□ 0.26
SYNE2-221ENST00000556342 POTEAQ6S8J7 498 aa16.65■□□□□ 0.26
SYNE2-221ENST00000556342 PIP4P2Q8N4L2 257 aa16.65■□□□□ 0.26
SYNE2-221ENST00000556342 FAM50AQ14320 339 aaKnown RBP16.64■□□□□ 0.25
SYNE2-221ENST00000556342 RIMS2Q9UQ26 1411 aa16.63■□□□□ 0.25
SYNE2-221ENST00000556342 SLAIN2Q9P270 581 aa16.63■□□□□ 0.25
SYNE2-221ENST00000556342 PPP1R15AO75807 674 aaPredicted RBP16.62■□□□□ 0.25
SYNE2-221ENST00000556342 HDGFP51858 240 aaKnown RBP16.61■□□□□ 0.25
SYNE2-221ENST00000556342 JCADQ9P266 1359 aa16.6■□□□□ 0.25
SYNE2-221ENST00000556342 TMEM131LA2VDJ0 1609 aa16.59■□□□□ 0.25
SYNE2-221ENST00000556342 PROM2Q8N271 834 aa16.59■□□□□ 0.25
SYNE2-221ENST00000556342 TBX22Q9Y458 520 aa16.59■□□□□ 0.25
SYNE2-221ENST00000556342 NCOA3Q9Y6Q9 1424 aa16.58■□□□□ 0.24
SYNE2-221ENST00000556342 GCC2Q8IWJ2 1684 aa16.57■□□□□ 0.24
SYNE2-221ENST00000556342 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.57■□□□□ 0.24
SYNE2-221ENST00000556342 CHD2O14647 1828 aaKnown RBP16.56■□□□□ 0.24
SYNE2-221ENST00000556342 MYO5BQ9ULV0 1848 aa16.56■□□□□ 0.24
SYNE2-221ENST00000556342 PHLPP1O60346 1717 aa16.56■□□□□ 0.24
SYNE2-221ENST00000556342 ADAMTS13Q76LX8 1427 aa16.56■□□□□ 0.24
SYNE2-221ENST00000556342 CHGAP10645 457 aaKnown RBP16.56■□□□□ 0.24
SYNE2-221ENST00000556342 UNC13BO14795 1591 aa16.55■□□□□ 0.24
SYNE2-221ENST00000556342 PRR29P0C7W0 189 aa16.54■□□□□ 0.24
SYNE2-221ENST00000556342 NUTM2DQ5VT03 806 aaPredicted RBP16.54■□□□□ 0.24
SYNE2-221ENST00000556342 C14orf37Q86TY3 774 aa16.54■□□□□ 0.24
SYNE2-221ENST00000556342 COL16A1Q07092 1604 aaPredicted RBP16.54■□□□□ 0.24
SYNE2-221ENST00000556342 PIK3R4Q99570 1358 aa16.53■□□□□ 0.24
SYNE2-221ENST00000556342 DIP2AQ14689 1571 aa16.53■□□□□ 0.24
SYNE2-221ENST00000556342 CADPS2Q86UW7 1296 aa16.52■□□□□ 0.24
SYNE2-221ENST00000556342 ROCK1Q13464 1354 aa16.51■□□□□ 0.23
SYNE2-221ENST00000556342 SPATA31A6Q5VVP1 1343 aa16.51■□□□□ 0.23
SYNE2-221ENST00000556342 FKBP8Q14318 412 aa16.51■□□□□ 0.23
SYNE2-221ENST00000556342 C19orf44Q9H6X5 657 aa16.51■□□□□ 0.23
SYNE2-221ENST00000556342 E9PCH4 1651 aa16.5■□□□□ 0.23
SYNE2-221ENST00000556342 LRP6O75581 1613 aa16.5■□□□□ 0.23
SYNE2-221ENST00000556342 ATF3P18847 181 aa16.5■□□□□ 0.23
SYNE2-221ENST00000556342 AHDC1Q5TGY3 1603 aaPredicted RBP16.48■□□□□ 0.23
SYNE2-221ENST00000556342 IQGAP3Q86VI3 1631 aa16.48■□□□□ 0.23
SYNE2-221ENST00000556342 SETD1AO15047 1707 aaKnown RBP16.48■□□□□ 0.23
SYNE2-221ENST00000556342 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.48■□□□□ 0.23
SYNE2-221ENST00000556342 PTPRUQ92729 1446 aa16.47■□□□□ 0.23
SYNE2-221ENST00000556342 TRPM2O94759 1503 aa16.47■□□□□ 0.23
SYNE2-221ENST00000556342 MEX3CQ5U5Q3 659 aaKnown RBP16.47■□□□□ 0.23
SYNE2-221ENST00000556342 AMOTL2Q9Y2J4 779 aa16.47■□□□□ 0.23
SYNE2-221ENST00000556342 NUP155O75694 1391 aa16.47■□□□□ 0.23
SYNE2-221ENST00000556342 ZNF772Q68DY9 489 aaPredicted RBP16.45■□□□□ 0.22
SYNE2-221ENST00000556342 BRINP3Q76B58 766 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms