RNA–Protein interactions for RNA: ENST00000544584.1

CLSTN3-215, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-215ENST00000544584 PPP1R15AO75807 674 aaPredicted RBP8.36□□□□□ -1.07
CLSTN3-215ENST00000544584 TXNDC2Q86VQ3 553 aa8.36□□□□□ -1.07
CLSTN3-215ENST00000544584 BCANQ96GW7 911 aa8.36□□□□□ -1.07
CLSTN3-215ENST00000544584 LRP5O75197 1615 aa8.36□□□□□ -1.07
CLSTN3-215ENST00000544584 UBR1Q8IWV7 1749 aa8.34□□□□□ -1.07
CLSTN3-215ENST00000544584 SPATA31A6Q5VVP1 1343 aa8.34□□□□□ -1.07
CLSTN3-215ENST00000544584 RXRBP28702 533 aa8.34□□□□□ -1.07
CLSTN3-215ENST00000544584 IDI1Q13907 227 aa8.34□□□□□ -1.07
CLSTN3-215ENST00000544584 SCAF11Q99590 1463 aaKnown RBP8.33□□□□□ -1.08
CLSTN3-215ENST00000544584 RGS12O14924 1447 aa8.33□□□□□ -1.08
CLSTN3-215ENST00000544584 CHGAP10645 457 aaKnown RBP8.33□□□□□ -1.08
CLSTN3-215ENST00000544584 ZRANB1Q9UGI0 708 aa8.33□□□□□ -1.08
CLSTN3-215ENST00000544584 EFCAB6Q5THR3 1501 aa8.33□□□□□ -1.08
CLSTN3-215ENST00000544584 MROH1Q8NDA8 1641 aa8.32□□□□□ -1.08
CLSTN3-215ENST00000544584 EP400Q96L91 3159 aa8.32□□□□□ -1.08
CLSTN3-215ENST00000544584 CEP152O94986 1710 aa8.32□□□□□ -1.08
CLSTN3-215ENST00000544584 FOXD1Q16676 465 aa8.32□□□□□ -1.08
CLSTN3-215ENST00000544584 TMEM94Q12767 1356 aa8.32□□□□□ -1.08
CLSTN3-215ENST00000544584 TMEM2Q9UHN6 1383 aa8.32□□□□□ -1.08
CLSTN3-215ENST00000544584 ARHGAP23Q9P227 1491 aa8.32□□□□□ -1.08
CLSTN3-215ENST00000544584 CFAP65Q6ZU64 1925 aaKnown RBP8.31□□□□□ -1.08
CLSTN3-215ENST00000544584 HFM1A2PYH4 1435 aa8.31□□□□□ -1.08
CLSTN3-215ENST00000544584 NOS1P29475 1434 aa8.31□□□□□ -1.08
CLSTN3-215ENST00000544584 SLIT1O75093 1534 aa8.31□□□□□ -1.08
CLSTN3-215ENST00000544584 SLC4A1APQ9BWU0 796 aaKnown RBP8.31□□□□□ -1.08
CLSTN3-215ENST00000544584 TET3O43151 1660 aa8.3□□□□□ -1.08
CLSTN3-215ENST00000544584 AHDC1Q5TGY3 1603 aaPredicted RBP8.3□□□□□ -1.08
CLSTN3-215ENST00000544584 ZNF326Q5BKZ1 582 aaKnown RBP8.3□□□□□ -1.08
CLSTN3-215ENST00000544584 NWD1Q149M9 1564 aa8.3□□□□□ -1.08
CLSTN3-215ENST00000544584 KDM5AP29375 1690 aaKnown RBP8.3□□□□□ -1.08
CLSTN3-215ENST00000544584 UNC13BO14795 1591 aa8.29□□□□□ -1.08
CLSTN3-215ENST00000544584 NAIPQ13075 1403 aa8.29□□□□□ -1.08
CLSTN3-215ENST00000544584 GCC2Q8IWJ2 1684 aa8.28□□□□□ -1.08
CLSTN3-215ENST00000544584 DIP2AQ14689 1571 aa8.28□□□□□ -1.08
CLSTN3-215ENST00000544584 NKTRP30414 1462 aaKnown RBP8.28□□□□□ -1.08
CLSTN3-215ENST00000544584 MEX3CQ5U5Q3 659 aaKnown RBP8.28□□□□□ -1.08
CLSTN3-215ENST00000544584 IQGAP3Q86VI3 1631 aa8.28□□□□□ -1.08
CLSTN3-215ENST00000544584 ATAD2Q6PL18 1390 aa8.27□□□□□ -1.09
CLSTN3-215ENST00000544584 VGFO15240 615 aaPredicted RBP8.27□□□□□ -1.09
CLSTN3-215ENST00000544584 KCNA6P17658 529 aa8.27□□□□□ -1.09
CLSTN3-215ENST00000544584 LTKP29376 864 aa8.27□□□□□ -1.09
CLSTN3-215ENST00000544584 RBM33Q96EV2 1170 aaKnown RBP8.27□□□□□ -1.09
CLSTN3-215ENST00000544584 RPGRIP1LQ68CZ1 1315 aa8.27□□□□□ -1.09
CLSTN3-215ENST00000544584 ADGRB3O60242 1522 aa8.26□□□□□ -1.09
CLSTN3-215ENST00000544584 IFFO2Q5TF58 517 aa8.26□□□□□ -1.09
CLSTN3-215ENST00000544584 TBX22Q9Y458 520 aa8.26□□□□□ -1.09
CLSTN3-215ENST00000544584 PLEKHG1Q9ULL1 1385 aa8.25□□□□□ -1.09
CLSTN3-215ENST00000544584 HRCP23327 699 aa8.25□□□□□ -1.09
CLSTN3-215ENST00000544584 RBM6P78332 1123 aaKnown RBP8.25□□□□□ -1.09
CLSTN3-215ENST00000544584 PROSER2Q86WR7 435 aaPredicted RBP8.25□□□□□ -1.09
CLSTN3-215ENST00000544584 SLAIN2Q9P270 581 aa8.25□□□□□ -1.09
CLSTN3-215ENST00000544584 RIMS2Q9UQ26 1411 aa8.25□□□□□ -1.09
CLSTN3-215ENST00000544584 AFF2P51816 1311 aa8.25□□□□□ -1.09
CLSTN3-215ENST00000544584 PIK3C2BO00750 1634 aa8.25□□□□□ -1.09
CLSTN3-215ENST00000544584 NHSL1Q5SYE7 1610 aa8.25□□□□□ -1.09
CLSTN3-215ENST00000544584 MSH6P52701 1360 aa8.24□□□□□ -1.09
CLSTN3-215ENST00000544584 SETD5Q9C0A6 1442 aa8.24□□□□□ -1.09
CLSTN3-215ENST00000544584 PIK3R4Q99570 1358 aa8.23□□□□□ -1.09
CLSTN3-215ENST00000544584 NUTM2BA6NNL0 878 aaPredicted RBP8.23□□□□□ -1.09
CLSTN3-215ENST00000544584 NUTM2EB1AL46 878 aaPredicted RBP8.23□□□□□ -1.09
CLSTN3-215ENST00000544584 NUTM2DQ5VT03 806 aaPredicted RBP8.23□□□□□ -1.09
CLSTN3-215ENST00000544584 C14orf37Q86TY3 774 aa8.23□□□□□ -1.09
CLSTN3-215ENST00000544584 NUTM2AQ8IVF1 878 aaPredicted RBP8.23□□□□□ -1.09
CLSTN3-215ENST00000544584 SLC26A8Q96RN1 970 aa8.23□□□□□ -1.09
CLSTN3-215ENST00000544584 CHD2O14647 1828 aaKnown RBP8.22□□□□□ -1.09
CLSTN3-215ENST00000544584 CCDC144AA2RUR9 1427 aa8.22□□□□□ -1.09
CLSTN3-215ENST00000544584 MPHOSPH9Q99550 1183 aa8.22□□□□□ -1.09
CLSTN3-215ENST00000544584 NCOA3Q9Y6Q9 1424 aa8.21□□□□□ -1.09
CLSTN3-215ENST00000544584 E9PCH4 1651 aa8.21□□□□□ -1.09
CLSTN3-215ENST00000544584 CCDC125Q86Z20 511 aa8.21□□□□□ -1.1
CLSTN3-215ENST00000544584 STAC3Q96MF2 364 aa8.21□□□□□ -1.1
CLSTN3-215ENST00000544584 ZFYVE9O95405 1425 aa8.2□□□□□ -1.1
CLSTN3-215ENST00000544584 ATF3P18847 181 aa8.2□□□□□ -1.1
CLSTN3-215ENST00000544584 CADPS2Q86UW7 1296 aa8.2□□□□□ -1.1
CLSTN3-215ENST00000544584 QTRT2Q9H974 415 aaKnown RBP8.2□□□□□ -1.1
CLSTN3-215ENST00000544584 TRPM2O94759 1503 aa8.19□□□□□ -1.1
CLSTN3-215ENST00000544584 TMEM131LA2VDJ0 1609 aa8.19□□□□□ -1.1
CLSTN3-215ENST00000544584 SPHKAPQ2M3C7 1700 aa8.19□□□□□ -1.1
CLSTN3-215ENST00000544584 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.19□□□□□ -1.1
CLSTN3-215ENST00000544584 ANKRD30BQ9BXX2 1392 aa8.19□□□□□ -1.1
CLSTN3-215ENST00000544584 NGLY1Q96IV0 654 aa8.18□□□□□ -1.1
CLSTN3-215ENST00000544584 C19orf44Q9H6X5 657 aa8.18□□□□□ -1.1
CLSTN3-215ENST00000544584 AMOTL2Q9Y2J4 779 aa8.18□□□□□ -1.1
CLSTN3-215ENST00000544584 RAB3GAP2Q9H2M9 1393 aa8.17□□□□□ -1.1
CLSTN3-215ENST00000544584 BCL9LQ86UU0 1499 aa8.17□□□□□ -1.1
CLSTN3-215ENST00000544584 KIF1BO60333 1816 aa8.17□□□□□ -1.1
CLSTN3-215ENST00000544584 RGL3Q3MIN7 710 aa8.16□□□□□ -1.1
CLSTN3-215ENST00000544584 BLMP54132 1417 aaPredicted RBP8.14□□□□□ -1.11
CLSTN3-215ENST00000544584 YY1P25490 414 aa8.14□□□□□ -1.11
CLSTN3-215ENST00000544584 C8orf37Q96NL8 207 aa8.14□□□□□ -1.11
CLSTN3-215ENST00000544584 ASXL1Q8IXJ9 1541 aa8.13□□□□□ -1.11
CLSTN3-215ENST00000544584 ATRNO75882 1429 aa8.13□□□□□ -1.11
CLSTN3-215ENST00000544584 DCCP43146 1447 aa8.12□□□□□ -1.11
CLSTN3-215ENST00000544584 ADAMTS13Q76LX8 1427 aa8.12□□□□□ -1.11
CLSTN3-215ENST00000544584 PNPLA6Q8IY17 1366 aa8.12□□□□□ -1.11
CLSTN3-215ENST00000544584 CLTCL1P53675 1640 aa8.12□□□□□ -1.11
CLSTN3-215ENST00000544584 MYO5BQ9ULV0 1848 aa8.12□□□□□ -1.11
CLSTN3-215ENST00000544584 BRINP3Q76B58 766 aa8.11□□□□□ -1.11
CLSTN3-215ENST00000544584 TRPC5Q9UL62 973 aaPredicted RBP8.11□□□□□ -1.11
CLSTN3-215ENST00000544584 LAMC1P11047 1609 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms