RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 ABCC3O15438 1527 aa10.68□□□□□ -0.7
CD44-237ENST00000534082 LTKP29376 864 aa10.67□□□□□ -0.7
CD44-237ENST00000534082 SPATA31A6Q5VVP1 1343 aa10.66□□□□□ -0.7
CD44-237ENST00000534082 TIAM1Q13009 1591 aa10.66□□□□□ -0.7
CD44-237ENST00000534082 PITPNM1O00562 1244 aa10.66□□□□□ -0.7
CD44-237ENST00000534082 TXNDC2Q86VQ3 553 aa10.66□□□□□ -0.7
CD44-237ENST00000534082 CCDC141Q6ZP82 1450 aa10.66□□□□□ -0.7
CD44-237ENST00000534082 PRDM15P57071 1507 aaPredicted RBP10.65□□□□□ -0.7
CD44-237ENST00000534082 RXRBP28702 533 aa10.65□□□□□ -0.7
CD44-237ENST00000534082 FGD6Q6ZV73 1430 aa10.65□□□□□ -0.7
CD44-237ENST00000534082 NKTRP30414 1462 aaKnown RBP10.64□□□□□ -0.71
CD44-237ENST00000534082 RBM33Q96EV2 1170 aaKnown RBP10.64□□□□□ -0.71
CD44-237ENST00000534082 MSH6P52701 1360 aa10.64□□□□□ -0.71
CD44-237ENST00000534082 PROSER2Q86WR7 435 aaPredicted RBP10.63□□□□□ -0.71
CD44-237ENST00000534082 EID1Q9Y6B2 187 aa10.63□□□□□ -0.71
CD44-237ENST00000534082 RGS12O14924 1447 aa10.63□□□□□ -0.71
CD44-237ENST00000534082 NWD1Q149M9 1564 aa10.63□□□□□ -0.71
CD44-237ENST00000534082 CAMSAP2Q08AD1 1489 aa10.62□□□□□ -0.71
CD44-237ENST00000534082 KCNA6P17658 529 aa10.62□□□□□ -0.71
CD44-237ENST00000534082 SLAIN2Q9P270 581 aa10.62□□□□□ -0.71
CD44-237ENST00000534082 SHPRHQ149N8 1683 aa10.62□□□□□ -0.71
CD44-237ENST00000534082 MTUS2Q5JR59 1369 aa10.62□□□□□ -0.71
CD44-237ENST00000534082 MROH1Q8NDA8 1641 aa10.61□□□□□ -0.71
CD44-237ENST00000534082 CLEC11AQ9Y240 323 aa10.6□□□□□ -0.71
CD44-237ENST00000534082 CEP152O94986 1710 aa10.6□□□□□ -0.71
CD44-237ENST00000534082 TMEM2Q9UHN6 1383 aa10.6□□□□□ -0.71
CD44-237ENST00000534082 SETBP1Q9Y6X0 1596 aa10.6□□□□□ -0.71
CD44-237ENST00000534082 KDM5AP29375 1690 aaKnown RBP10.6□□□□□ -0.71
CD44-237ENST00000534082 PIK3C2BO00750 1634 aa10.59□□□□□ -0.71
CD44-237ENST00000534082 AHDC1Q5TGY3 1603 aaPredicted RBP10.59□□□□□ -0.71
CD44-237ENST00000534082 SSUH2Q9Y2M2 353 aa10.59□□□□□ -0.71
CD44-237ENST00000534082 EIF2AK4Q9P2K8 1649 aaKnown RBP10.58□□□□□ -0.72
CD44-237ENST00000534082 TET3O43151 1660 aa10.58□□□□□ -0.72
CD44-237ENST00000534082 SLC26A8Q96RN1 970 aa10.58□□□□□ -0.72
CD44-237ENST00000534082 ZRANB1Q9UGI0 708 aa10.58□□□□□ -0.72
CD44-237ENST00000534082 EHBP1L1Q8N3D4 1523 aa10.58□□□□□ -0.72
CD44-237ENST00000534082 AFF2P51816 1311 aa10.58□□□□□ -0.72
CD44-237ENST00000534082 EFCAB6Q5THR3 1501 aa10.57□□□□□ -0.72
CD44-237ENST00000534082 DIP2AQ14689 1571 aa10.56□□□□□ -0.72
CD44-237ENST00000534082 NUTM2BA6NNL0 878 aaPredicted RBP10.56□□□□□ -0.72
CD44-237ENST00000534082 NUTM2EB1AL46 878 aaPredicted RBP10.56□□□□□ -0.72
CD44-237ENST00000534082 NUTM2DQ5VT03 806 aaPredicted RBP10.56□□□□□ -0.72
CD44-237ENST00000534082 NUTM2AQ8IVF1 878 aaPredicted RBP10.56□□□□□ -0.72
CD44-237ENST00000534082 PIP4P2Q8N4L2 257 aa10.56□□□□□ -0.72
CD44-237ENST00000534082 ARHGEF5Q12774 1597 aa10.56□□□□□ -0.72
CD44-237ENST00000534082 EP400Q96L91 3159 aa10.55□□□□□ -0.72
CD44-237ENST00000534082 ATAD2Q6PL18 1390 aa10.55□□□□□ -0.72
CD44-237ENST00000534082 ARHGAP31Q2M1Z3 1444 aa10.55□□□□□ -0.72
CD44-237ENST00000534082 CEP162Q5TB80 1403 aa10.55□□□□□ -0.72
CD44-237ENST00000534082 CFAP65Q6ZU64 1925 aaKnown RBP10.54□□□□□ -0.72
CD44-237ENST00000534082 RBM6P78332 1123 aaKnown RBP10.54□□□□□ -0.72
CD44-237ENST00000534082 RSPH4AQ5TD94 716 aa10.54□□□□□ -0.72
CD44-237ENST00000534082 SPDYE1Q8NFV5 336 aaPredicted RBP10.54□□□□□ -0.72
CD44-237ENST00000534082 STAG3Q9UJ98 1225 aa10.53□□□□□ -0.72
CD44-237ENST00000534082 MAST1Q9Y2H9 1570 aa10.52□□□□□ -0.72
CD44-237ENST00000534082 TSPY4P0CV99 314 aa10.51□□□□□ -0.73
CD44-237ENST00000534082 TSPY10P0CW01 314 aa10.51□□□□□ -0.73
CD44-237ENST00000534082 ADGRB3O60242 1522 aa10.51□□□□□ -0.73
CD44-237ENST00000534082 QTRT2Q9H974 415 aaKnown RBP10.5□□□□□ -0.73
CD44-237ENST00000534082 NCOA3Q9Y6Q9 1424 aa10.5□□□□□ -0.73
CD44-237ENST00000534082 FXR2P51116 673 aaKnown RBP eCLIP10.49□□□□□ -0.73
CD44-237ENST00000534082 C14orf37Q86TY3 774 aa10.49□□□□□ -0.73
CD44-237ENST00000534082 BCANQ96GW7 911 aa10.49□□□□□ -0.73
CD44-237ENST00000534082 C8orf37Q96NL8 207 aa10.49□□□□□ -0.73
CD44-237ENST00000534082 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.49□□□□□ -0.73
CD44-237ENST00000534082 CHD2O14647 1828 aaKnown RBP10.49□□□□□ -0.73
CD44-237ENST00000534082 CADPS2Q86UW7 1296 aa10.48□□□□□ -0.73
CD44-237ENST00000534082 SETD5Q9C0A6 1442 aa10.48□□□□□ -0.73
CD44-237ENST00000534082 ASXL1Q8IXJ9 1541 aa10.48□□□□□ -0.73
CD44-237ENST00000534082 DUOX2Q9NRD8 1548 aa10.48□□□□□ -0.73
CD44-237ENST00000534082 ATF3P18847 181 aa10.47□□□□□ -0.73
CD44-237ENST00000534082 BRINP3Q76B58 766 aa10.47□□□□□ -0.73
CD44-237ENST00000534082 NGLY1Q96IV0 654 aa10.47□□□□□ -0.73
CD44-237ENST00000534082 LRP5O75197 1615 aa10.47□□□□□ -0.73
CD44-237ENST00000534082 IDI1Q13907 227 aa10.46□□□□□ -0.73
CD44-237ENST00000534082 PLEKHG1Q9ULL1 1385 aa10.46□□□□□ -0.74
CD44-237ENST00000534082 NHSL1Q5SYE7 1610 aa10.45□□□□□ -0.74
CD44-237ENST00000534082 C19orf44Q9H6X5 657 aa10.45□□□□□ -0.74
CD44-237ENST00000534082 ZFYVE9O95405 1425 aa10.44□□□□□ -0.74
CD44-237ENST00000534082 PNPLA6Q8IY17 1366 aa10.44□□□□□ -0.74
CD44-237ENST00000534082 ERBINQ96RT1 1412 aa10.43□□□□□ -0.74
CD44-237ENST00000534082 SPDYE4A6NLX3 237 aa10.43□□□□□ -0.74
CD44-237ENST00000534082 NOS1P29475 1434 aa10.42□□□□□ -0.74
CD44-237ENST00000534082 DCCP43146 1447 aa10.42□□□□□ -0.74
CD44-237ENST00000534082 CCDC125Q86Z20 511 aa10.42□□□□□ -0.74
CD44-237ENST00000534082 LMTK2Q8IWU2 1503 aa10.42□□□□□ -0.74
CD44-237ENST00000534082 KANK1Q14678 1352 aa10.41□□□□□ -0.74
CD44-237ENST00000534082 KIF15Q9NS87 1388 aa10.41□□□□□ -0.74
CD44-237ENST00000534082 PPP1R15AO75807 674 aaPredicted RBP10.41□□□□□ -0.74
CD44-237ENST00000534082 ADAMTS2O95450 1211 aa10.41□□□□□ -0.74
CD44-237ENST00000534082 PRKAR2AP13861 404 aaKnown RBP10.41□□□□□ -0.74
CD44-237ENST00000534082 LRRC59Q96AG4 307 aaKnown RBP10.41□□□□□ -0.74
CD44-237ENST00000534082 MST1RQ04912 1400 aa10.41□□□□□ -0.74
CD44-237ENST00000534082 RIMS2Q9UQ26 1411 aa10.41□□□□□ -0.74
CD44-237ENST00000534082 PRR29P0C7W0 189 aa10.4□□□□□ -0.74
CD44-237ENST00000534082 USP21Q9UK80 565 aa10.4□□□□□ -0.74
CD44-237ENST00000534082 TRPC5Q9UL62 973 aaPredicted RBP10.4□□□□□ -0.74
CD44-237ENST00000534082 TBX22Q9Y458 520 aa10.4□□□□□ -0.74
CD44-237ENST00000534082 ATRNO75882 1429 aa10.4□□□□□ -0.75
CD44-237ENST00000534082 ADAMTS13Q76LX8 1427 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms